CX296863

Overview
NameCX296863
Unique NameCX296863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10577 contig Ccv1_Contig10577:350..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.493e-99
Identity = 174/222 (78.38%), Postives = 193/222 (86.94%), Query Frame = 2
Query:    2 KDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE 664
            K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYKEE DL AALKRCFP+GID+YFENVGGKMLDAVLLNM   GRIAVCGMISQYNLE  EGVHNL  +I KRIR++GF+  D+Y  YPKFLELV+P I+EGK+ YVED+A+
Sbjct:   94 KGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVAD 315          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.545e-96
Identity = 170/222 (76.58%), Postives = 188/222 (84.68%), Query Frame = 2
Query:    2 KDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE 664
            K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYKEE DL AALKRCFP GIDIYFENVGGKMLDAVL+NM + GRIAVCGMISQYNLE  EGVHNL  +I KRIR++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+
Sbjct:   96 KGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVAD 317          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.897e-44
Identity = 101/215 (46.98%), Postives = 133/215 (61.86%), Query Frame = 2
Query:   26 TGWEEYSLVTAPQL--LIKIQHT-DVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLY-PKFLELVIPAIREGKMVYVEDI 658
            +GWEEY+ V+   L  L  I +   +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK  +  +  G+D  FNYK+E    A  + C P+GIDIYFENVGG+ +DAVL NM L+GRI  CG ISQYN   P  V NL  ++ K + ++GF+  +    Y  ++ E +   I EGK+ Y  D+
Sbjct:  107 SGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPFKALPRLC-PKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDV 319          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.897e-44
Identity = 98/224 (43.75%), Postives = 133/224 (59.38%), Query Frame = 2
Query:    2 KDDLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPE---GVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE 664
            K D+V G+  W+E+S V+   L  KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A NYK   D+  AL+   P G+D+YF+NVGG + DAV+  +    RI VCG IS YN E      G     +LI  +  ++GF+  DY   + +  + +   ++ GK+ Y E I E
Sbjct:   88 KGDIVIGNLSWQEFSAVSESALR-KIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITE 310          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.532e-43
Identity = 100/223 (44.84%), Postives = 139/223 (62.33%), Query Frame = 2
Query:   11 LVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNL--EKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAE 664
            LV   +GW  +S+    QL  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AFNYK    L+  LK+  P G D YF+NVGG+  + V+  M+  GR+A+CG IS YN   + P G  + E ++ + IR+EGF+   +   +  K L+ ++  + EGK+ Y E + E
Sbjct:   84 LVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVIRQMKKFGRVAICGAISMYNSTGQLPPG-PSPESVLYQEIRMEGFIFNRWKGEVGQKALKELLTWVLEGKIQYREFVIE 304          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 103/226 (45.58%), Postives = 139/226 (61.50%), Query Frame = 2
Query:    2 KDDLVWGSTGWEEYSLVTAPQLL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEK--PEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAE 664
            K  +V    GW  +S+     L  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  +AV+L M+  GRIA+CG ISQYN     P+G    E +I +++R+EGF+   +   +  K L  ++  + EGK+   E + E
Sbjct:   81 KGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGPCPQGPAP-EVVIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYVTE 304          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.397e-41
Identity = 101/223 (45.29%), Postives = 137/223 (61.43%), Query Frame = 2
Query:   11 LVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNL--EKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAE 664
            +V   +GW  + +     L  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+CG IS YN   + P G  + E +I K++R+EGF+   +   +  K L  ++  + EGK+ Y E + +
Sbjct:   84 IVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPG-PSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTK 304          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.679e-40
Identity = 95/193 (49.22%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   92 VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAE 664
            +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  + V+L M+  GRIA+CG ISQYN   P     + E +I +++R+EGF+   +   +  K L  ++  + EGK+ Y E I E
Sbjct:  113 LPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYNRTGPCPPGPSPEVIIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITE 304          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.968e-40
Identity = 97/222 (43.69%), Postives = 132/222 (59.46%), Query Frame = 2
Query:   11 LVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAE 664
            +V   +GW  +S+    +L  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK   P+G D YF+NVGG+  +  +  M+  GRIA+CG IS YN   P     + E +I K + L+GF+   +   +  K L  ++  + EGK+ Y E + E
Sbjct:   84 IVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEHVTE 304          
BLAST of CX296863 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.052e-39
Identity = 96/225 (42.67%), Postives = 130/225 (57.78%), Query Frame = 2
Query:    8 DLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYN-LEKPEGVHNLEQLIG----KRIRLEGF-LAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE 664
            D V G +GW++Y + +   L+    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  +   +   K C P+GIDIY+ENVGGK+ DAVL  +    RI VCG++S YN  E P G   L  L+     KRIRL+GF +A DY H   +F   +   ++E K+ Y E+I +
Sbjct:   94 DWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITD 316          
The following BLAST results are available for this feature:
BLAST of CX296863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
P2_ARATH1.493e-9978.38Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.545e-9676.58Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO8.897e-4446.98Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YFMJ_BACSU8.897e-4443.75Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT7.532e-4344.84Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_MOUSE3.164e-4145.58Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_CAVPO5.397e-4145.29Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_RAT2.679e-4049.22Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_BOVIN5.968e-4043.69Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
YNCB_ECOLI5.052e-3942.67Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC05803F08SK FerrChloL1 Citrus clementina cDNA clone C05803F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296863 ID=CX296863; Name=CX296863; organism=Citrus clementina; type=EST; length=666bp
AAAAGATGACTTGGTTTGGGGCTCCACCGGGTGGGAGGAGTACAGTCTCG
TTACAGCCCCACAGCTTTTGATTAAAATTCAGCATACAGATGTGCCCCTT
TCATACTATACTGGAATCCTTGGTATGCCTGGTGTGACTGCATACGCTGG
TTTATACGAAGTTTGCTCTCCGAAGAAAGGTGAGTACGTCTATGTATCTG
CAGCATCTGGAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCT
GGTTGCTATGTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTCGATTTGTT
GAAGAACAAGTTTGGATTTGATGATGCTTTTAACTACAAGGAAGAGCCAG
ACTTGGATGCAGCACTCAAAAGATGCTTCCCTCAAGGAATCGACATATAT
TTCGAAAACGTTGGGGGAAAGATGCTGGACGCAGTGCTACTCAACATGAG
GCTCCGGGGCCGCATTGCGGTATGCGGTATGATCTCGCAGTACAACCTGG
AAAAACCTGAAGGCGTACACAACTTAGAGCAACTGATTGGGAAACGGATT
CGCCTGGAAGGATTTCTAGCTGGTGATTACTATCACCTCTATCCGAAATT
CTTGGAACTGGTCATTCCTGCAATCAGAGAAGGAAAGATGGTGTATGTGG
AAGACATAGCCGAAGG
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