CX296878

Overview
NameCX296878
Unique NameCX296878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig722 contig Ccv1_Contig722:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.091e-54
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELYVFKWTSLLIPPTTVL++NLVG+VAG+S+AINSGYQSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct:  961 DFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.091e-54
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELYVFKWTSLLIPPTTVL++NLVG+VAG+S+AINSGYQSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct:  961 DFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 8.648e-52
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELY+FKWT+LLIPPTT+LIVNLVG+VAGVS+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVR+DPFTS  T  +   +CGINC
Sbjct:  951 DFAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.648e-52
Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  959 DFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.648e-52
Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  959 DFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.475e-51
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DFAELY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++   CGINC
Sbjct:  967 DFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-TCGINC 1081          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.516e-51
Identity = 94/115 (81.74%), Postives = 108/115 (93.91%), Query Frame = -1
Query:  408 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANS-NGQCGI 749
            DFAELY+FKWT+LLIPPTTVL+VNL+GIVAGVS+A+NSGYQSWGPLFGKLFFA+WVIAHLYPFLKGLLGRQNRTPTIVIVWS+LLASIFSLLWVR++PF   +  AN+ NG+ G+
Sbjct:  966 DFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNANNFNGKGGV 1080          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.094e-50
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            DF ELY FKWT+LLIPPTTVLI+N+VG+VAG+S AIN+GYQSWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPF    TK     +CGINC
Sbjct:  912 DFGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVL-KTKGPDTSKCGINC 1026          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.604e-48
Identity = 90/101 (89.11%), Postives = 96/101 (95.05%), Query Frame = -1
Query:  447 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS 749
            DFAELYVFKWTSLLIPPTT+L+VNLVGIVAGVS+AINSGYQSWGPL GKL FA WV+AHLYPFLKGLLGRQNRTPTIVIVWS LLASIFSLLWVR++PF S
Sbjct:  953 DFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 86/116 (74.14%), Postives = 102/116 (87.93%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +FAELY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  941 EFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
The following BLAST results are available for this feature:
BLAST of CX296878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA1_ORYSJ1.091e-5484.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI1.091e-5484.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA3_ARATH8.648e-5282.76Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ8.648e-5280.17Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI8.648e-5280.17Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ1.475e-5180.17Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA1_ARATH2.516e-5181.74Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA7_ARATH8.094e-5076.72Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESAA_ARATH2.604e-4889.11Probable cellulose synthase A catalytic subunit 10... [more]
CESA9_ORYSJ2.204e-4774.14Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC05803G11SK FerrChloL1 Citrus clementina cDNA clone C05803G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296878 ID=CX296878; Name=CX296878; organism=Citrus clementina; type=EST; length=758bp
TTTACTGCAGAATGGAACATTTCTTTTTTTTTTTCACAAACAGAGGATTA
CATTGTTTCTTAGCGCTCTGAACTTGAGAAAATGGAGCTTCACAATTTAG
GTCCAACACAACTAAACAAGTAGGGACCAACACCAAGCACCTGTATGGAA
GTTACAAAACGATATAAGAATAAATATTAAATAAGATACAAAAAGGGTTT
TACTAAAGCCTTAAGTCCTCCTTAGTAGGCTCCACGACAAATGAAAAGAT
CCCATATCATCAATCTCCTTTCTCCAGACCGACGAGAAGTAAATTAACTT
ACGATCATTTCCCAATGACATAATTTCTTCTTATATACACTGATGAGAGC
TTGAAGGAAGAATGGCATTTGAGGCCACAAATAATCATCCAACATGCACT
AGCAATTGATGCCACATTGACCGTTTGAATTGGCTTTGGTGTCATCAGAG
GTAAAGGGATCAACACGCACCCACAGCAAGGAGAAAATGGAAGCAAGTAG
GATAGACCACACAATGACAATTGTTGGTGTGCGGTTTTGACGACCCAACA
GACCCTTCAGGAAAGGATACAGATGGGCAATGACCCATATGGCAAAGAAT
AGCTTGCCAAAGAGTGGACCCCATGATTGGTAACCACTGTTTATGGCCCA
TGATACACCAGCTACAATACCCACCAAGTTCACAATCAGGACTGTAGTTG
GAGGGATGAGAAGAGATGTCCATTTGAATACATAAAGCTCTGCAAAATCT
CATCATCA
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