CX297504

Overview
NameCX297504
Unique NameCX297504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 429.098 bits (1102), Expect = 1.137e-119
Identity = 211/231 (91.34%), Postives = 222/231 (96.10%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELVARMGLGKSN++ EPPEFGAAADGDADRNM+LGKRFFVTPSDSVAIIAANAVE+IPYFSAGLKGVARSMPTSAALDVVAK+LNLKFFEVPTGWKFFGNLMD GLCS+CGEESFGTGSDHIREKDGIWAVLAWLSILA+KN+ENL GGKLVTVEDIV  HWATYGRHYYTRYDYENVDAGAAKELMA LVK+QSSL EVN+IV GI SDVSKVV+ADEFEYK
Sbjct:  267 DPNLTYAKELVARMGLGKSNSEVEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKSLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNRENLGGGKLVTVEDIVHNHWATYGRHYYTRYDYENVDAGAAKELMACLVKLQSSLTEVNEIVSGIQSDVSKVVHADEFEYK 497          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 417.542 bits (1072), Expect = 3.424e-116
Identity = 206/231 (89.18%), Postives = 218/231 (94.37%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELV RMGLGKS++  EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAV+SIPYF++GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMD G+CSICGEESFGTGSDHIREKDGIWAVLAWLSI+A KNK+NL G KLVTVEDIVR+HWATYGRHYYTRYDYENVDAGAAKELMANLV MQSSL +VN +VK I SDVS+VV ADEFEYK
Sbjct:  268 DPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLVKEIRSDVSEVVAADEFEYK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 417.157 bits (1071), Expect = 4.472e-116
Identity = 205/231 (88.74%), Postives = 218/231 (94.37%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELV RMGLGKS++  EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAV+SIPYF++GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMD G+CSICGEESFGTGSDHIREKDGIWAVLAWLSI+A KNK+NL G KLVTVEDIVR+HWATYGRHYYTRYDYENVDAGAAKELMANLV MQSSL +VN ++K I SDVS+VV ADEFEYK
Sbjct:  268 DPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVSEVVAADEFEYK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.699e-115
Identity = 204/230 (88.70%), Postives = 219/230 (95.22%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYAKELVARMGLGKS  + E PEFGAAADGDADRNM+LGKRFFVTPSDSVAIIAANAVE+IPYFSAGLKGVARSMPTSAALDVVAK+LNLKFFEVPTGWKFFGNLMD GLCS+CGEESFGTGSDHIREKDGIWAVLAWLSILA+K K+NL+  KLV+VEDIVR+HWATYGRHYYTRYDYENVDAGAAKELMA+LVK+QSSLPEVN+I+KG  SDVSKVV+ DEFEY
Sbjct:  268 DPNLTYAKELVARMGLGKSEPEGEVPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKTKDNLE-SKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAHLVKLQSSLPEVNEIIKGASSDVSKVVHGDEFEY 496          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.699e-115
Identity = 203/231 (87.88%), Postives = 216/231 (93.51%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELV RMGLGKSNTQ EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVE+IPYFS GLKGVARSMPTSAALDVVAK+LNLKFFEVPTGWKFFGNLMD G+CSICGEESFGTGSDH+REKDGIWAVLAWLSILAHKNK+NL+G KLVTVEDIV +HWATYGRHYYTRYDYENVDAG AKELMA LV +QS L +VN+IVKG+ S V+ V+ ADEFEYK
Sbjct:  268 DPNLTYAKELVERMGLGKSNTQGEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVEAIPYFSGGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGVCSICGEESFGTGSDHVREKDGIWAVLAWLSILAHKNKDNLNGEKLVTVEDIVCQHWATYGRHYYTRYDYENVDAGGAKELMAYLVNLQSDLSKVNNIVKGVHSGVANVIAADEFEYK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.590e-113
Identity = 202/232 (87.07%), Postives = 218/232 (93.97%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDG-GKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELVARMGLGKS+T  EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANA+ +IPYFS+GLKGVA SMPTSAALDVVAK+LNLKFFEVPTGWKFFGNLMD G+CS+CGEESFGTGSDHIREKDGIWAVLAW+SILAHKNK N+DG  KLV+VEDIVR+HWATYGRHYYTRYDYENVDAG AKELM +LVK+QSS+PEVN IVKGI SDV+ V +ADEFEYK
Sbjct:  267 DPNLTYAKELVARMGLGKSDTGGEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAIGAIPYFSSGLKGVA-SMPTSAALDVVAKSLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWMSILAHKNKGNIDGNAKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGKAKELMEHLVKLQSSIPEVNKIVKGIRSDVASVASADEFEYK 497          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 6.682e-112
Identity = 202/233 (86.70%), Postives = 214/233 (91.85%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQD-EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDG-GKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELVARMGL K++    EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAV +IPYFS+GLKGVARSMPTSAALDVVAKNL LKFFEVPTGWKFFGNLMD G+CS+CGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKE LDG  KLVTVEDIVR+HWATYGRHYYTRYDYENVDA AAKELM  LVK+QSSLPEVN I+KGI  +V+ V +ADEFEYK
Sbjct:  268 DPNLTYAKELVARMGLSKTDDAGGEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVGAIPYFSSGLKGVARSMPTSAALDVVAKNLGLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKETLDGNAKLVTVEDIVRQHWATYGRHYYTRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIKGIHPEVANVASADEFEYK 500          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.489e-111
Identity = 193/231 (83.55%), Postives = 215/231 (93.07%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYK 695
            DPNLTYAKELVARMGL K++++  PPEFGAAADGD DRNM+LGKRFFVTPSDSVAIIAANAV++IPYFS GLKGVARSMPTSAALD+VAK+LNLKFFEVPTGWKFFGNLMD G+CSICGEESFGTGSDHIREKDGIWAVLAWLSILA+KNK+NL  G LV+VEDIVR+HWA YGRHYYTRYDYENV+A  AK+LMA+LVK+QSS+ EVN ++KGI SDVS VV+ADEFEYK
Sbjct:  268 DPNLTYAKELVARMGLSKTHSEPNPPEFGAAADGDGDRNMVLGKRFFVTPSDSVAIIAANAVQAIPYFSGGLKGVARSMPTSAALDIVAKHLNLKFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDNLGEGNLVSVEDIVRQHWAIYGRHYYTRYDYENVNADGAKDLMAHLVKLQSSIDEVNKLIKGIRSDVSNVVHADEFEYK 498          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 8.168e-110
Identity = 196/230 (85.22%), Postives = 213/230 (92.61%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEY 692
            DPNLTYAKELV RMGLGK++   EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAV+SIPYF++GLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMD G+CS+CGEESFGTGSDHIREKDGIWAVLAWLSILA+KNK+NL G KLVTVE+IV +HW  YGRHYYTRYDYENVDA AAKELMANLVKMQSSL +VN ++K I  +V+ VV+ADEFEY
Sbjct:  267 DPNLTYAKELVDRMGLGKTSNV-EPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDNLGGDKLVTVENIVLQHWGIYGRHYYTRYDYENVDAEAAKELMANLVKMQSSLSDVNKLIKEIQPNVADVVSADEFEY 495          
BLAST of CX297504 vs. ExPASy Swiss-Prot
Match: PGMP_ARATH (Phosphoglucomutase, chloroplastic OS=Arabidopsis thaliana GN=PGMP PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 138/203 (67.98%), Postives = 165/203 (81.28%), Query Frame = 3
Query:    3 DPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDDGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQS 611
            DPNLTYAK+LV  M       +D  P+FGAA+DGD DRNM+LG +FFVTPSDSVAIIAANA E+IPYF AG KG+ARSMPTS ALD VA+ L L FFEVPTGWKFFGNLMD G  SICGEESFGTGSDHIREKDGIWAVLAWLSILAH+NK+   G KLV+V D+V+++WATYGR++++RYDYE  ++  A +++  L ++ S
Sbjct:  320 DPNLTYAKDLVDVM------YRDNGPDFGAASDGDGDRNMVLGNKFFVTPSDSVAIIAANAQEAIPYFRAGPKGLARSMPTSGALDRVAEKLKLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRNKDTKPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMIEYLREILS 516          
The following BLAST results are available for this feature:
BLAST of CX297504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGMC_POPTN1.137e-11991.34Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGMC1_MAIZE3.424e-11689.18Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC2_MAIZE4.472e-11688.74Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC_PEA1.699e-11588.70Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGMC_MESCR1.699e-11587.88Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC1_ARATH1.590e-11387.07Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC2_ARATH6.682e-11286.70Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC_SOLTU1.489e-11183.55Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGMC_BROIN8.168e-11085.22Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]
PGMP_ARATH2.245e-7567.98Phosphoglucomutase, chloroplastic OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC06002B11SK RindPdig24 Citrus clementina cDNA clone C06002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297504 ID=CX297504; Name=CX297504; organism=Citrus clementina; type=EST; length=718bp
CAGATCCCAATTTGACTTATGCAAAAGAGTTGGTTGCTCGTATGGGATTG
GGTAAATCAAACACTCAAGATGAACCGCCAGAGTTTGGTGCTGCTGCTGA
TGGTGATGCGGATCGTAACATGATCCTTGGCAAAAGGTTTTTTGTTACTC
CATCAGATTCAGTTGCCATCATTGCTGCAAATGCAGTTGAATCCATACCC
TACTTTTCTGCTGGTTTGAAGGGAGTTGCCAGGAGTATGCCAACCTCAGC
TGCCCTAGATGTTGTAGCCAAGAACTTGAATTTGAAGTTCTTTGAGGTAC
CAACAGGGTGGAAATTTTTTGGTAATTTGATGGATGATGGGTTATGTTCA
ATTTGTGGGGAAGAAAGTTTTGGAACTGGCTCAGACCATATACGTGAGAA
AGATGGAATCTGGGCTGTTCTGGCCTGGTTATCCATTCTTGCTCATAAAA
ATAAGGAAAACCTTGATGGGGGAAAGCTTGTGACAGTTGAAGATATAGTT
CGCAAGCATTGGGCTACTTATGGTCGCCACTACTACACTCGATATGACTA
TGAGAATGTGGATGCAGGTGCAGCAAAGGAATTGATGGCAAATTTGGTCA
AAATGCAGTCTTCACTTCCTGAAGTTAATGATATTGTGAAGGGGATCTGT
TCAGATGTGTCGAAGGTTGTCAATGCAGACGAATTTGAATACAAGATCCT
GTTGATGGTTCCATCTCA
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