CX297506

Overview
NameCX297506
Unique NameCX297506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:282..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.119e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   94 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.180e-20
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            VFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   94 VFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.969e-19
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            VFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:   93 VFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            VF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR+AS +  +V
Sbjct:   91 VFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            V++YFEDNAGVIVNPKGEMKGSAITGP+ KECADLWPRIAS A  +V
Sbjct:   93 VYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
The following BLAST results are available for this feature:
BLAST of CX297506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL23_ARATH6.119e-21100.0060S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC5.180e-2097.8760S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU1.969e-1995.7460S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_YEAST1.411e-1780.8560S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_SCHPO1.842e-1782.9860S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_RAT1.560e-1684.7860S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PONAB1.560e-1684.7860S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_PIG1.560e-1684.7860S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE1.560e-1684.7860S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU1.560e-1684.7860S ribosomal protein L23 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC06002C01SK RindPdig24 Citrus clementina cDNA clone C06002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297506 ID=CX297506; Name=CX297506; organism=Citrus clementina; type=EST; length=411bp
GAATTCGGCACGAGGGTCTTCATGTACTTTGAAGATAATGCAGGTGTTAT
TGTGAATCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTG
GTAAAGAGTGTGCTGATTTGTGGCCGAGGATTGCAAGTGCAGCCAATGCT
ATCGTTTAAGACATTCAAGACCGATAACCTATATCATCCTTTTTGTTGCA
CTAAAAAGAATTCTGGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTTTTC
TGTGAACTTTCTGTATGATTTTGTTGTTCTAGTTTTGGAAGTGGTATGAA
AGTTTGGAGTTTTGTTGATCTTGATATCATTTTCATGCTGATTGTGTTTT
TGAATTCAACTTCCGATGCAATACGGTTGCAATTTTATCAAAAAAAAAAA
AAAAAAAAAAA
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