CX298531 | Citrus Genome Database

Overview


Name	CX298531
Unique Name	CX298531
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	627

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_SESIN (Inositol-3-phosphate synthase OS=Sesamum indicum PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.449e-14
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            I V+ YVPYVGD KRA+DEYTSEIFM  K+    HNT
Sbjct:  383 IVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNT 419

HSP 2 Score: 45.8246 bits (107), Expect = 1.449e-14
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE EG+FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  446 KAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_WHEAT (Inositol-3-phosphate synthase OS=Triticum aestivum GN=MIPS PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.449e-14
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM  K     HNT
Sbjct:  383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNT 419

HSP 2 Score: 46.2098 bits (108), Expect = 1.449e-14
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPLDQL-TPCISFISLQ 339
            KAE EG+FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  446 KAEGEGKFHSFHPVATILSYLTKAPLVPAGTPVVNALSKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_TOBAC (Inositol-3-phosphate synthase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.446e-14
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM  K     HNT
Sbjct:  383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNT 419

HSP 2 Score: 45.8246 bits (107), Expect = 2.446e-14
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE EG+FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  446 KAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_NICPA (Inositol-3-phosphate synthase OS=Nicotiana paniculata GN=INPS1 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.446e-14
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM  K     HNT
Sbjct:  383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNT 419

HSP 2 Score: 45.8246 bits (107), Expect = 2.446e-14
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE EG+FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  446 KAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_PHAVU (Inositol-3-phosphate synthase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.527e-13
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYV D KRA+DEYTSEIFM  K     HNT
Sbjct:  384 VVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVMHNT 420

HSP 2 Score: 45.0542 bits (105), Expect = 1.527e-13
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            K+E EG+FHSF PVATIL++ TKAPL    TP I+ +S Q
Sbjct:  447 KSEGEGKFHSFHPVATILSYLTKAPLVPPGTPVINALSKQ 486

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_ARATH (Inositol-3-phosphate synthase isozyme 1 OS=Arabidopsis thaliana GN=At4g39800 PE=2 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 1.527e-13
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYV D KRA+DEYTSEIFM  K     HNT
Sbjct:  384 VVVIKYVPYVADSKRAMDEYTSEIFMGGKNTIVMHNT 420

HSP 2 Score: 45.0542 bits (105), Expect = 1.527e-13
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            K+E EG+FHSF PVATIL++ TKAPL    TP I+ +S Q
Sbjct:  447 KSEGEGKFHSFHPVATILSYLTKAPLVPPGTPVINALSKQ 486

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO2_ARATH (Inositol-3-phosphate synthase isozyme 2 OS=Arabidopsis thaliana GN=At2g22240 PE=2 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 2.577e-13
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYV D KRA+DEYTSEIFM  +     HNT
Sbjct:  383 VVVIKYVPYVADSKRAMDEYTSEIFMGGRNTIVLHNT 419

HSP 2 Score: 45.8246 bits (107), Expect = 2.577e-13
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE EG+FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  446 KAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_ORYSJ (Inositol-3-phosphate synthase OS=Oryza sativa subsp. japonica GN=INO1 PE=2 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 3.347e-13
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM  K+    HNT
Sbjct:  383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNT 419

HSP 2 Score: 41.5874 bits (96), Expect = 3.347e-13
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE E +FHSF PVATIL++ TKAPL    TP ++ ++ Q
Sbjct:  446 KAEGEEKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_MAIZE (Inositol-3-phosphate synthase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 3.347e-13
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM  K     HNT
Sbjct:  383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNT 419

HSP 2 Score: 41.9726 bits (97), Expect = 3.347e-13
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE E +FHSF PVATIL++ TKAPL    TP ++ ++ Q
Sbjct:  446 KAEGEDKFHSFHPVATILSYLTKAPLVPPGTPVVNALAKQ 485

[Close]

BLAST of CX298531 vs. ExPASy Swiss-Prot
Match: INO1_MESCR (Inositol-3-phosphate synthase OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.645e-13
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = -2

Query:  387 ICVL*YVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 497
            + V+ YVPYVGD KRA+DEYTSEIFM        HNT
Sbjct:  385 VVVIKYVPYVGDSKRAMDEYTSEIFMGGTNTIVMHNT 421

HSP 2 Score: 43.1282 bits (100), Expect = 5.645e-13
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = -1

Query:  223 KAE*EGEFHSFRPVATILTFFTKAPL-DQLTPCISFISLQ 339
            KAE E +FHSF PVATIL++ TKAPL    TP ++ +S Q
Sbjct:  448 KAEEEDKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQ 487

The following BLAST results are available for this feature:

BLAST of CX298531 vs. ExPASy Swiss-Prot

BLAST of CX298531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
INO1_SESIN	1.449e-14	67.57	Inositol-3-phosphate synthase OS=Sesamum indicum P...	[more]
INO1_WHEAT	1.449e-14	64.86	Inositol-3-phosphate synthase OS=Triticum aestivum...	[more]
INO1_TOBAC	2.446e-14	64.86	Inositol-3-phosphate synthase OS=Nicotiana tabacum...	[more]
INO1_NICPA	2.446e-14	64.86	Inositol-3-phosphate synthase OS=Nicotiana panicul...	[more]
INO1_PHAVU	1.527e-13	62.16	Inositol-3-phosphate synthase OS=Phaseolus vulgari...	[more]
INO1_ARATH	1.527e-13	62.16	Inositol-3-phosphate synthase isozyme 1 OS=Arabido...	[more]
INO2_ARATH	2.577e-13	59.46	Inositol-3-phosphate synthase isozyme 2 OS=Arabido...	[more]
INO1_ORYSJ	3.347e-13	64.86	Inositol-3-phosphate synthase OS=Oryza sativa subs...	[more]
INO1_MAIZE	3.347e-13	64.86	Inositol-3-phosphate synthase OS=Zea mays PE=2 SV=...	[more]
INO1_MESCR	5.645e-13	62.16	Inositol-3-phosphate synthase OS=Mesembryanthemum ...	[more]

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Properties


Property Name	Value
Genbank description	C05071H02SK PhIFruit1 Citrus clementina cDNA clone C05071H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX298531 ID=CX298531; Name=CX298531; organism=Citrus clementina; type=EST; length=627bp
CNNNNNNNNNNNNNNNNNNNNAGTTTTTTTTTTTTTTTTTTTTTAATTCA
AAATGCCAGACTGTTTCATTATCATTAGCAAAATTTCCAAGGTACCACTA
TTGTCTCACACACAAAAATTATGAAGAACGATGCCCTAAAATTTTTCTTC
AGTAGGCTTGTGAACCCGGTTGCGTCCCCACAGATTTGTCCATGTACCAA
AATTTATGAGCTCCCGACCAGCTTGCAGGCTGATGAATGATATACATGGC
GTTAACTGATCAAGTGGAGCCTTGGTGAAGAAGGTGAGAATTGTAGCCAC
AGGTCTGAAAGAGTGGAATTCGCCCTCTCATTCAGCTTTGAGCATGATCC
TGCTGCTGAGTAAGATGATGGCAGCAGCCAAAAGAGAGTATTGTGGCCGC
AGAATGGTGTCTTTGCCTCCATAAAAATTTCTGATGTGTACTCATCTATG
GCTCTCTTGCCATCCCCAACATATGGCACATACTACAGAACACAAATACT
CTACCACACAACAACACTCAAGAATGATTAACAAAAACTACGATACTTCT
TCTCAATATAAGCTATGCAAATGACAGTCGATCGCCAGCACTTGTAAGAA
TCTAAACTGCAAATGTACCTTGATTCC