CX299654

Overview
NameCX299654
Unique NameCX299654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.364e-48
Identity = 94/184 (51.09%), Postives = 130/184 (70.65%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQV 558
            S YWR PF  LAD T+L EFIVLD++STG S G  +L++ TVAR SDLG ND  Y+ R+HLGG+ H GDSV+GY ++ + +N+D F+ +         +PDVVL+KK Y R K  K+R W+LKRMA+EH++   +   N   S+ Q+QE  R E+DYE+FL+++EED ELRQ+++LYKNR+  V
Sbjct:  299 SVYWRAPFNALADVTQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGYFIANSNYNSDLFDGLN-----IDYVPDVVLVKKLYQR-KSKKSRHWKLKRMAKEHKDIDASLDYN---SRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANV 473          

HSP 2 Score: 25.7942 bits (55), Expect = 3.364e-48
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  627 HMDELLDDFDELNMED 674
            ++DELLD+ DE+ +ED
Sbjct:  492 NIDELLDELDEMTLED 507          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.955e-35
Identity = 79/178 (44.38%), Postives = 118/178 (66.29%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYK 540
            S YWR PFP LAD  EL EFIV D++  G +NG+Y L++  + ++SD GS   T+ TRTHLGG+L+ G++VL YHL+ T FNN+ ++ +        +IP+VV++KK Y ++KK K R+WRLK +  +  E+             ++Q+  R E+DYE+FL+++EED ELRQ ++LYK
Sbjct:  303 SIYWRTPFPALADIPELTEFIVADVDLLGPTNGKYALADVELIKSSD-GS---THLTRTHLGGILNAGNTVLAYHLAVTNFNNEVYDTLR-----EDSIPEVVIVKKTYPQTKK-KNRNWRLKTIGMQKAEDV------------KKQDIERQERDYELFLQNLEEDPELRQGVNLYK 458          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 64/178 (35.96%), Postives = 98/178 (55.06%), Query Frame = 1
Query:   10 TYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSK-ARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYK 540
            T+W  PF  L+   +L EF VLD+  TG + GRY LS+  + R++D G+ND  Y  R+HLG +L+ GD  LGY ++ + F +     ++ + Q    +PD VL+KK Y      +  R W  K + +E           +   K+ E +Q  ME+D E FLR++E D ELR  +++YK
Sbjct:  294 TFWNSPFRALSSYKQLVEFTVLDVNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPGDLALGYDVASSNFPDSDLAGMKKNQQ----LPDFVLVKKTYPSKNDFRFKRHWYFKEIPKE----------GIENPKKFEIDQ--MERDREEFLREIEADPELRSKINIYK 455          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            +TYWR PF +L    +L EFIV+D +           G  + +++L+E  V + S++ +    Y  RTHLG +L+ GD VLG+ L+    N+   E I   N +   IPDVVLIKK Y R+K+ + R+W+LK + R+ E   T                   E+ Y+ FL D+EED+ +R+ +++YKN    V +
Sbjct:  297 NTYWRSPFNSLFHPKQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQ-QYHCRTHLGHLLNPGDLVLGFDLANCNLND---EFINKMNPHH--IPDVVLIKKSYDRTKRQRRRNWKLKEIERDREGMDTDD-----------------ERQYQDFLEDLEEDEVIRKNVNIYKNANLPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 68/195 (34.87%), Postives = 104/195 (53.33%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            +TYWR PF +L    ++ EFIV+D E           G  + +++L+E  V + S++ +    Y  RTHLG +L+ GD VLG+ LS    N+   E I   N +   IPDVVLIKK Y R+++ + R+W+LK M R+ E   T                   E+ Y+ FL D+EED+ LR+ ++++KN    V +
Sbjct:  297 NTYWRYPFNSLFHPKQMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQ-QYHCRTHLGHLLNPGDLVLGFDLSNCNLND---EFINKMNPHH--IPDVVLIKKSYDRARRQRRRNWKLKEMDRDREGMDTDD-----------------ERQYQDFLEDLEEDELLRKNVNIFKNANVPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            ST+W  PF +L    +L EFIV++             G  + ++ L E  V + S++ + D  YF RTHLG +L+ GD VLG+ L+    N++    +      S  +PDVVLIKK Y R+K+ + R+W+LK +ARE E        N+ T           E+ Y+ FL D+EED+ +R+ +++Y++    V +
Sbjct:  297 STFWSHPFNSLCHPKQLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            ST+W  PF +L    +L EFIV++             G  + ++ L E  V + S++ + D  YF RTHLG +L+ GD VLG+ L+    N++    +      S  +PDVVLIKK Y R+K+ + R+W+LK +ARE E        N+ T           E+ Y+ FL D+EED+ +R+ +++Y++    V +
Sbjct:  297 STFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 62/195 (31.79%), Postives = 105/195 (53.85%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIEST---------GHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            +T+W  PF +L    +L EFIV++  +          G  + ++ L E  + + S++ + D  YF RTHLG +L+ GD VLG+ L+    N++    +      S  +PDVVLIKK Y R+K+ + R+W+LK +AR+ E        N+ T           E+ Y+ FL D+EED+ +R+ +++Y++    V +
Sbjct:  297 NTFWSHPFNSLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEYVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARDRE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKHVNIYRDATIPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 61/195 (31.28%), Postives = 102/195 (52.31%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564
            +T+W  PF +L    +L EFIV++             G  + ++ L E  V + S++ + D  YF RTHLG +L+ GD VLG+ L     N++    ++     S  +PDVVLIKK Y R+++ + R+W+LK +AR+ E   T                   E+ Y+ FL D+EED+ +R+ +++Y++    V +
Sbjct:  297 NTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLVNCNLNDEHVNKMK-----SDRVPDVVLIKKSYDRTRRQRRRNWKLKELARDRENTDTDD-----------------ERQYQDFLEDLEEDEAIRKNVNIYRDSTIPVES 468          
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKN 543
            ST+WR PF +L    +L EFI++DI+           G  + ++ L+E  V + S++ S+   Y  RT +G +L++GD VLG+  +    N++    +   +     +PDVVLIKK Y R K+++ R W+LK M RE +   T                   E+ Y  FL D+EED+ LR+ ++++++
Sbjct:  297 STFWRHPFNSLCSPRQLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSH-QYHCRTFMGHLLNIGDLVLGFDFANANINDEFLNKMNPQH-----VPDVVLIKKSYDRMKRARKRVWKLKEMDREKDAADTDD-----------------ERQYTEFLEDLEEDEMLRKNINIFRD 461          
The following BLAST results are available for this feature:
BLAST of CX299654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NMD3_YEAST3.364e-4851.0960S ribosomal export protein NMD3 OS=Saccharomyces... [more]
NMD3_SCHPO2.955e-3544.3860S ribosomal export protein nmd3 OS=Schizosacchar... [more]
NMD3_DICDI6.176e-2535.9660S ribosomal export protein NMD3 OS=Dictyostelium... [more]
NMD3_XENTR1.165e-2334.3660S ribosomal export protein NMD3 OS=Xenopus tropi... [more]
NMD3_XENLA1.521e-2334.8760S ribosomal export protein NMD3 OS=Xenopus laevi... [more]
NMD3_PONAB1.521e-2333.3360S ribosomal export protein NMD3 OS=Pongo abelii ... [more]
NMD3_HUMAN1.521e-2333.3360S ribosomal export protein NMD3 OS=Homo sapiens ... [more]
NMD3_MOUSE2.197e-2231.7960S ribosomal export protein NMD3 OS=Mus musculus ... [more]
NMD3_BOVIN3.747e-2231.2860S ribosomal export protein NMD3 OS=Bos taurus GN... [more]
NMD3_DANRE3.172e-2131.3860S ribosomal export protein NMD3 OS=Danio rerio G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06024G05SK RindPdig24 Citrus clementina cDNA clone C06024G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299654 ID=CX299654; Name=CX299654; organism=Citrus clementina; type=EST; length=709bp
CCTACTAGCACTTACTGGCGCCAGCCATTCCCGAATCTTGCGGATACCAC
CGAGCTGAGGGAATTTATCGTCTTAGACATTGAATCCACCGGCCACTCTA
ATGGTCGGTACCTCCTATCTGAGGCCACAGTTGCTCGTGCTTCGGATCTA
GGATCCAACGATATCACCTATTTCACACGGACTCACCTCGGTGGTGTTCT
ACACGTGGGTGATTCTGTTCTCGGGTACCATTTGTCAGGAACCCAGTTCA
ACAATGATCAATTCGAAGCAATTGAGAACAGCAACCAGTACAGCTCAACA
ATTCCGGATGTGGTCCTTATCAAGAAGCACTATGTCCGCAGCAAGAAGTC
CAAGGCCCGCAGCTGGCGTTTGAAGCGCATGGCTCGCGAGCACGAAGAGG
AGGCGACTGCCGCTGTGGTCAACGTTCCCACAAGCAAGCGCCAGGAGCAG
GAGCAGGCTAGGATGGAACAAGATTACGAAATGTTCTTGCGTGACGTTGA
AGAAGATCAGGAACTGCGTCAAACCCTCGATCTGTACAAAAACCGCCAGT
ACCAGGTCAGGGCAGACCAGATGGATGAGGATGGTGATGATGACATGGAC
GAGGATGGACAAGCCTTGCCGAAAATCACATGGATGAGCTGCTTGATGAC
TTTGATGAGTTGAACATGGAGGACAACGAGTAGCAATCCGATGTTACATT
GATGATCAT
back to top