CX299654
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 3.364e-48 Identity = 94/184 (51.09%), Postives = 130/184 (70.65%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQV 558 S YWR PF LAD T+L EFIVLD++STG S G +L++ TVAR SDLG ND Y+ R+HLGG+ H GDSV+GY ++ + +N+D F+ + +PDVVL+KK Y R K K+R W+LKRMA+EH++ + N S+ Q+QE R E+DYE+FL+++EED ELRQ+++LYKNR+ V Sbjct: 299 SVYWRAPFNALADVTQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGYFIANSNYNSDLFDGLN-----IDYVPDVVLVKKLYQR-KSKKSRHWKLKRMAKEHKDIDASLDYN---SRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANV 473 HSP 2 Score: 25.7942 bits (55), Expect = 3.364e-48 Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 627 HMDELLDDFDELNMED 674 ++DELLD+ DE+ +ED Sbjct: 492 NIDELLDELDEMTLED 507
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.955e-35 Identity = 79/178 (44.38%), Postives = 118/178 (66.29%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYK 540 S YWR PFP LAD EL EFIV D++ G +NG+Y L++ + ++SD GS T+ TRTHLGG+L+ G++VL YHL+ T FNN+ ++ + +IP+VV++KK Y ++KK K R+WRLK + + E+ ++Q+ R E+DYE+FL+++EED ELRQ ++LYK Sbjct: 303 SIYWRTPFPALADIPELTEFIVADVDLLGPTNGKYALADVELIKSSD-GS---THLTRTHLGGILNAGNTVLAYHLAVTNFNNEVYDTLR-----EDSIPEVVIVKKTYPQTKK-KNRNWRLKTIGMQKAEDV------------KKQDIERQERDYELFLQNLEEDPELRQGVNLYK 458
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25 Identity = 64/178 (35.96%), Postives = 98/178 (55.06%), Query Frame = 1 Query: 10 TYWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSK-ARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYK 540 T+W PF L+ +L EF VLD+ TG + GRY LS+ + R++D G+ND Y R+HLG +L+ GD LGY ++ + F + ++ + Q +PD VL+KK Y + R W K + +E + K+ E +Q ME+D E FLR++E D ELR +++YK Sbjct: 294 TFWNSPFRALSSYKQLVEFTVLDVNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPGDLALGYDVASSNFPDSDLAGMKKNQQ----LPDFVLVKKTYPSKNDFRFKRHWYFKEIPKE----------GIENPKKFEIDQ--MERDREEFLREIEADPELRSKINIYK 455
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23 Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 +TYWR PF +L +L EFIV+D + G + +++L+E V + S++ + Y RTHLG +L+ GD VLG+ L+ N+ E I N + IPDVVLIKK Y R+K+ + R+W+LK + R+ E T E+ Y+ FL D+EED+ +R+ +++YKN V + Sbjct: 297 NTYWRSPFNSLFHPKQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQ-QYHCRTHLGHLLNPGDLVLGFDLANCNLND---EFINKMNPHH--IPDVVLIKKSYDRTKRQRRRNWKLKEIERDREGMDTDD-----------------ERQYQDFLEDLEEDEVIRKNVNIYKNANLPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23 Identity = 68/195 (34.87%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 +TYWR PF +L ++ EFIV+D E G + +++L+E V + S++ + Y RTHLG +L+ GD VLG+ LS N+ E I N + IPDVVLIKK Y R+++ + R+W+LK M R+ E T E+ Y+ FL D+EED+ LR+ ++++KN V + Sbjct: 297 NTYWRYPFNSLFHPKQMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQ-QYHCRTHLGHLLNPGDLVLGFDLSNCNLND---EFINKMNPHH--IPDVVLIKKSYDRARRQRRRNWKLKEMDRDREGMDTDD-----------------ERQYQDFLEDLEEDELLRKNVNIFKNANVPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23 Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 ST+W PF +L +L EFIV++ G + ++ L E V + S++ + D YF RTHLG +L+ GD VLG+ L+ N++ + S +PDVVLIKK Y R+K+ + R+W+LK +ARE E N+ T E+ Y+ FL D+EED+ +R+ +++Y++ V + Sbjct: 297 STFWSHPFNSLCHPKQLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23 Identity = 65/195 (33.33%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 ST+W PF +L +L EFIV++ G + ++ L E V + S++ + D YF RTHLG +L+ GD VLG+ L+ N++ + S +PDVVLIKK Y R+K+ + R+W+LK +ARE E N+ T E+ Y+ FL D+EED+ +R+ +++Y++ V + Sbjct: 297 STFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARERE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22 Identity = 62/195 (31.79%), Postives = 105/195 (53.85%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIEST---------GHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 +T+W PF +L +L EFIV++ + G + ++ L E + + S++ + D YF RTHLG +L+ GD VLG+ L+ N++ + S +PDVVLIKK Y R+K+ + R+W+LK +AR+ E N+ T E+ Y+ FL D+EED+ +R+ +++Y++ V + Sbjct: 297 NTFWSHPFNSLCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEYVNKMN-----SDRVPDVVLIKKSYDRTKRQRRRNWKLKELARDRE--------NMDTDD---------ERQYQDFLEDLEEDEAIRKHVNIYRDATIPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22 Identity = 61/195 (31.28%), Postives = 102/195 (52.31%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQVRA 564 +T+W PF +L +L EFIV++ G + ++ L E V + S++ + D YF RTHLG +L+ GD VLG+ L N++ ++ S +PDVVLIKK Y R+++ + R+W+LK +AR+ E T E+ Y+ FL D+EED+ +R+ +++Y++ V + Sbjct: 297 NTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNT-DKQYFCRTHLGHLLNPGDLVLGFDLVNCNLNDEHVNKMK-----SDRVPDVVLIKKSYDRTRRQRRRNWKLKELARDRENTDTDD-----------------ERQYQDFLEDLEEDEAIRKNVNIYRDSTIPVES 468
BLAST of CX299654 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21 Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 7 STYWRQPFPNLADTTELREFIVLDIE---------STGHSNGRYLLSEATVARASDLGSNDITYFTRTHLGGVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARSWRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDVEEDQELRQTLDLYKN 543 ST+WR PF +L +L EFI++DI+ G + ++ L+E V + S++ S+ Y RT +G +L++GD VLG+ + N++ + + +PDVVLIKK Y R K+++ R W+LK M RE + T E+ Y FL D+EED+ LR+ ++++++ Sbjct: 297 STFWRHPFNSLCSPRQLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSH-QYHCRTFMGHLLNIGDLVLGFDFANANINDEFLNKMNPQH-----VPDVVLIKKSYDRMKRARKRVWKLKEMDREKDAADTDD-----------------ERQYTEFLEDLEEDEMLRKNINIFRD 461 The following BLAST results are available for this feature:
BLAST of CX299654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX299654 ID=CX299654; Name=CX299654; organism=Citrus clementina; type=EST; length=709bpback to top |