CX299657

Overview
NameCX299657
Unique NameCX299657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig805 contig Ccv1_Contig805:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.088e-114
Identity = 197/224 (87.95%), Postives = 211/224 (94.20%), Query Frame = 1
Query:   25 AAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGPG+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFNSI+GVSLAAAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYA
Sbjct:   18 AARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVC-DDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYA 240          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 9.958e-105
Identity = 184/230 (80.00%), Postives = 206/230 (89.57%), Query Frame = 1
Query:    7 ATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            + SE  AAKQK +DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM+ LGWGPGV I+++SWIITLYTLWQMVEMHE+VPGKR DRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGG SL KVH+L+C + CKEI+ +++IMIFASVHFV+SHLPNFNSI+ +SLAAAVMSL+YSTIAW+ASV KGV PDV Y  +A T  G VFNF +ALGDVAFAYA
Sbjct:    7 SASEVAAAKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPD-CKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYA 235          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.699e-104
Identity = 180/228 (78.95%), Postives = 206/228 (90.35%), Query Frame = 1
Query:   13 SEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            +++ + KQK +DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM+ LGWGPGV I+I+SW+IT YTLWQMV+MHEMVPGKRFDRYHELGQHAFGEKLGL+IVVPQQLIVEVGV IVYMVTGGKSL K+H+LLC + CK I+ +Y+IMIFAS+HFVL+HLPNFNSI+ VSLAAAVMSLSYSTIAW+ SV+KGV P+V Y  +A T +G VFNF +ALGDVAFAYA
Sbjct:    9 TKDASTKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTD-CKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYA 235          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 377.096 bits (967), Expect = 4.942e-104
Identity = 179/226 (79.20%), Postives = 201/226 (88.94%), Query Frame = 1
Query:   19 EQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            ++  +QK IDDWLPITSSRNAKWWYS FHNVTAMVGAGVL LP+ MAQLGWGPG+A+LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ AFGE+LGLYI+VPQQ+IVEVGVCIVYMVTGG+SL K HE+ C++ C  I+LS+FIMIFAS HFVLSHLPNFNSI+GVSL AAVMSLSYSTIAW+A+  KGVQ DV YGYK+ T A TV +FF+ LG +AFAYA
Sbjct:   23 DELERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEIACQD-CSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYA 247          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.766e-85
Identity = 151/219 (68.95%), Postives = 180/219 (82.19%), Query Frame = 1
Query:   43 IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-PCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            ++DWLPIT+SRNA W+YSAFHNVTA+VGAGVL LPYAM++LGWGPGV +LILSW+ITLYT WQM+EMHEM  GKRFDRYHELGQ AFG+KLGLYIVVP QL+VE   CIVYMVTGG+SL K+H+L   +  C+++K+ +FI+IFAS  FVLS L NFNSI+GVSL AAVMS+SYSTIAW AS+ KGV  +V YGYK +        F  ALG++AFAYA
Sbjct:   24 LEDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYA 242          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.330e-84
Identity = 155/234 (66.24%), Postives = 187/234 (79.91%), Query Frame = 1
Query:    4 HATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC--KEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            H   E+Q      ++DWLPIT+SRNA W+YSAFHNVTA+VGAGVL LPYAM++LGWGPGV +LILSW+ITLYTLWQM+EMHEM  G+RFDRYHELGQ AFG+KLGLYI+VP QL+VE+ VCIVYMVTGGKSL  VH+L     + C ++++ +FI+IFAS  FVLS L NFNSI+GVSL AAVMS+SYSTIAW AS+RKG     V YGY+ +T +     F SALG++AFAYA
Sbjct:   12 HLVEEDQPFD---LEDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTGSVEYGYRKRTTS-VPLAFLSALGEMAFAYA 241          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.124e-74
Identity = 135/228 (59.21%), Postives = 167/228 (73.25%), Query Frame = 1
Query:   13 SEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            S  +   +K+ + W     SR AKWWYS FH VTAM+GAGVLSLPYAMA LGWGPG  +L ++W +TL T+WQMV++HE VPG RFDRY +LG++AFG KLG +IV+PQQLIV+VG  IVYMVTGGK L +  E+ C   C  ++ SY+I+ F  VHF+LS LPNFNS+AGVSLAAAVMSL YSTIAW  S+  G  PDV+Y YKA       F  F+ALG ++FA+A
Sbjct:    8 SPSKETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITC-STCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFA 234          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.370e-68
Identity = 130/223 (58.30%), Postives = 165/223 (73.99%), Query Frame = 1
Query:   31 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGYKAKTAAGTVFNFFSALGDVAFAYA 696
            +Q   +DWLP+T+SR AKW+YSAFHNVTAMVGAGVL LP+AM+QLGWGPG+  +I+SW IT Y+LWQMV++HE VPGKR DRY ELGQ AFG KLG +IV+PQQL+V++   IVY VTGGKSL K  ELL     + I+ +Y+I+ FA++  VLS  P+FNSI  VSL AA+MS  YS IA  AS+ KG +     YG +  T A  VF+ F+ +G +AFA+A
Sbjct:   21 RQMDYNDWLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN-LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFA 242          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.025e-42
Identity = 89/219 (40.64%), Postives = 135/219 (61.64%), Query Frame = 1
Query:   46 DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLS--YFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAY-GYKAKTAAGTVFNFFSALGDVAFAY 693
            D WLPIT SRN    Y+AFHN+ A VG   L LP A A LGW  G+  L +++   LYTLW +V++HE VPGKR++RY EL Q AFGE+LG+++ +   + +  G     ++ GG+++    +++C   C    L+   + ++F S+  VLS LPN NSIAG+SL  AV +++YST+ W  SV +     ++Y      + +G++F   +ALG +AFA+
Sbjct:   85 DAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAF 303          
BLAST of CX299657 vs. ExPASy Swiss-Prot
Match: LHTL7_ARATH (Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 73/220 (33.18%), Postives = 121/220 (55.00%), Query Frame = 1
Query:   43 IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAW---SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAY 693
            +++WLPIT SR    + + FH + + +G  V+ LP A A LGW  G  IL + ++  LYT W +V++HE VPG R  RY  L   +FG KLG  + +   + +  G C + ++TGGKS+ ++ +++  +    +      ++F+ +  ++S  PN NS+ GVSL  A M ++Y T+ W    AS  +  Q  V+Y     T   +  + F+A+G +A  Y
Sbjct:   26 VEEWLPITESRKGNVYTATFHLLCSGIGLQVILLPAAFAALGWVWGTIILTVGFVWKLYTTWLLVQLHEAVPGIRISRYVRLAIASFGVKLGKLLGIFPVMYLSGGACTILVITGGKSIQQLLQIMSDDNTAPLTSVQCFLVFSCIAMIMSQFPNLNSLFGVSLIGAFMGIAYCTVIWILPVASDSQRTQVSVSYA----TMDKSFVHIFNAIGLIALVY 241          
The following BLAST results are available for this feature:
BLAST of CX299657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LHT1_ARATH3.088e-11487.95Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHT2_ARATH9.958e-10580.00Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL2_ARATH1.699e-10478.95Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL1_ARATH4.942e-10479.20Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL3_ARATH1.766e-8568.95Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHTL4_ARATH3.330e-8466.24Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL6_ARATH3.124e-7459.21Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL5_ARATH4.370e-6858.30Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL8_ARATH7.025e-4240.64Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
LHTL7_ARATH1.328e-3233.18Lysine histidine transporter-like 7 OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06024G08SK RindPdig24 Citrus clementina cDNA clone C06024G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299657 ID=CX299657; Name=CX299657; organism=Citrus clementina; type=EST; length=696bp
AACCATGCCACCAGTGAAGAACAAGCAGCAAAGCAGAAAGCAATTGATGA
CTGGCTTCCAATTACTTCCTCAAGGAATGCAAAATGGTGGTACTCAGCTT
TTCACAATGTTACGGCCATGGTTGGAGCTGGTGTCCTCAGTCTCCCTTAT
GCCATGGCTCAACTTGGATGGGGTCCTGGTGTTGCCATTCTGATATTGTC
GTGGATCATCACTCTGTACACCTTGTGGCAAATGGTTGAGATGCACGAGA
TGGTGCCGGGAAAACGGTTTGACAGATACCATGAACTGGGGCAGCATGCT
TTTGGTGAAAAACTTGGTCTCTATATCGTGGTGCCACAACAGCTTATTGT
TGAAGTCGGTGTGTGCATTGTCTATATGGTTACGGGAGGCAAATCACTGC
ATAAGGTCCATGAACTTTTATGCAAAGAACCATGCAAAGAAATAAAACTT
AGTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTACTCTCCCATCT
CCCCAACTTCAATTCCATTGCCGGTGTCTCTTTGGCAGCTGCAGTTATGT
CCTTGAGTTACTCTACAATTGCTTGGTCAGCTTCAGTCCGCAAGGGTGTT
CAGCCAGATGTGGCGTATGGATACAAAGCTAAGACTGCAGCAGGGACAGT
CTTTAACTTCTTTAGTGCCTTGGGTGATGTGGCTTTTGCATATGCC
back to top