CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11699 contig Ccv1_Contig11699:9..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 3
Query:   12 QQPVPADGKTI-----GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            Q  +  DGK +     GEIV+ G  V +GY K   A  ET  +GW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP VLEA VV ++DE WG+ P AFV    +V +       E+++  C  K+  Y VPK++ F   LP+ A+ K+ +  LR   +E
Sbjct:  315 QLRIEKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETIVDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFVVKAGQVTE-------EEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLLEE 480          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACC1 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 10987) GN=menE PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            T GEIV+ G  V  GY     A  ET  NGW HTGD+G    + ++ + DR  D+IISGGENI   ++E ++  HPAV EA VV   D++WG+ P AFV    EV +       E+I+  C AK+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  329 TEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPVAFVVKSGEVTE-------EEIIHFCEAKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACCQ (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain Q1) GN=menE PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            T GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HPAV EA VV   D++WG+ P AFV    EV +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  329 TEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFVVKSGEVTE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACC7 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187) GN=menE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            T GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HPAV EA VV   D++WG+ P AFV    EV +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  329 TEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFVVKSGEVTE-------EEIIHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACWK (2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 66/158 (41.77%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  E   NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HPAV+EA VV  ADE WG+ P AFV    +V +       E+I++ C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  331 GEIVVKGPNVTGGYFNREDATHEAIRNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVVEAGVVGMADESWGQVPAAFVVKSGDVTE-------EEIIRFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRKLVEEM 481          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACHK (2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis subsp. konkukian GN=menE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    EV +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEVTE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACCR (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=menE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HPAV EA VV  +D++WG+ P AFV     V +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMSDDKWGQVPAAFVVKSGAVTE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVL 494
            GEI + G  VMKGYLKN  AN+++F +GW+ TGD+G    D ++ + DR  D+IISGGENI   EVE ++  HP V EA V    D+ WG+ P A++     VD+       E++ + C+ ++ +Y VPK+  F   LP+ A+ K+ +H L
Sbjct:  335 GEITVKGPTVMKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLVADSPVDE-------EELSEFCKERLASYKVPKAFHFVDRLPRNASNKLMRHKL 478          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACC0 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH820) GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACAN (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  331 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
MENE_BACCN1.456e-2839.312-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACC11.456e-2841.882-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACCQ1.901e-2841.882-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACC72.483e-2841.882-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACWK3.243e-2841.772-succinylbenzoate--CoA ligase OS=Bacillus weihens... [more]
MENE_BACHK1.232e-2741.142-succinylbenzoate--CoA ligase OS=Bacillus thuring... [more]
MENE_BACCR1.232e-2741.142-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACLD1.609e-2741.062-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
MENE_BACC01.609e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACAN1.609e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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