CX299659

Overview
NameCX299659
Unique NameCX299659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299659_ssr306 microsatellite CX299659_ssr306:306..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig806 contig Ccv1_Contig806:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.808e-48
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            AEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG G+
Sbjct:  182 AEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGS 279          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.586e-48
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            AEEDKKVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEA+CNPIITAVYQRSGGAPG G+
Sbjct:  182 AEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQRSGGAPGGGS 279          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.690e-47
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            AEEDKKVKEKIDARN+LETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG G
Sbjct:  558 AEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGG 654          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.765e-47
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 299
            AEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG  +E
Sbjct:  558 AEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGASE 656          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.868e-46
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            AEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  185 AEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 279          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.868e-46
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            AEEDKKVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  559 AEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 653          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.440e-46
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            AEEDKKVKE+IDARN LETYVYNMKNQINDKDKLADKLESDEK+KIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA G  +
Sbjct:   61 AEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGASGGSS 158          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.010e-45
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 299
            AEEDKKVKEKIDARN+LETYVYNMKNQ++DKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAPGAG E
Sbjct:  557 AEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGE 655          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.896e-44
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP-GAGTE 299
            AEEDKKVKEKIDARN+LETYVYNMKNQ+NDKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAP GAG E
Sbjct:  557 AEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGGAGGE 656          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.645e-44
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            AEEDKKVKEKIDARNSLETY+YNMKNQI+D DKLADKLESDEK+KIE AVKEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGG  G
Sbjct:  558 AEEDKKVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGPSG 652          
The following BLAST results are available for this feature:
BLAST of CX299659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
BIP2_TOBAC5.808e-4894.90Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC7.586e-4893.88Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP_SOLLC1.690e-4794.85Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP5_TOBAC3.765e-4791.92Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP8_TOBAC1.868e-4694.74Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC1.868e-4694.74Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP3_TOBAC2.440e-4692.86Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
BIP2_ARATH6.010e-4586.87Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH3.896e-4487.00Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP_SPIOL6.645e-4491.58Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06024G10SK RindPdig24 Citrus clementina cDNA clone C06024G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299659 ID=CX299659; Name=CX299659; organism=Citrus clementina; type=EST; length=576bp
TTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCGATGCTCGCAACAGC
CTTGAGACCTATGTCTATAACATGAAAAACCAGATTAATGACAAGGACAA
GCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAAGATTGAAACTGCTG
TAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGAGCGCAGAGAAAGAG
GACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTTTGCAACCCCATCAT
CACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGGTGCTGGCACTGAAT
CATCGGATGATGATGATTCACACGATGAGCTCTAAAGAATTTTTACTTCG
ATTGACCATATTGCCAAAACTGTCAAGAGGCTAAAATTGAGTAAAATAGG
CTTTTTAGATTATCTGAGGGTACTTACTGTAATTTTTCTCGTGGTAGGAG
AAGTAAAAGGGAGGCGGAATTTCCCTTTCTTCGCGTGTTTTTTTGGATGT
GAAGATACTTTAAAGGATCTTTTCTTATTTCATTACTAGTGTTTCCTTCA
ATATTAAAAAAAAAAAAAAAAAAAAA
back to top