CX299665

Overview
NameCX299665
Unique NameCX299665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.141e-56
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = -1
Query:  291 DVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 629
            DVDKGGNPTHSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNSIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  498 DVDKGGNPTHSIFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.723e-54
Identity = 104/113 (92.04%), Postives = 111/113 (98.23%), Query Frame = -1
Query:  291 DVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 629
            DVDKGGNPTHSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+SIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  498 DVDKGGNPTHSICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.235e-52
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = -1
Query:  291 DVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 629
            DV+KGGNPTHSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLDHFF ELG ++ KRLS+LLNEDPA+MERRSA++KRLELYR+AQSEIDAVAWSK
Sbjct:  498 DVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.041e-47
Identity = 91/113 (80.53%), Postives = 104/113 (92.04%), Query Frame = -1
Query:  291 DVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 629
            D +KGGNPTHSIFDRYND+YLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLD FFTELG+ E  +LS LL+EDPAV +RR+++AKRLELYRSAQ++I+AVAWSK
Sbjct:  498 DSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.267e-30
Identity = 58/98 (59.18%), Postives = 83/98 (84.69%), Query Frame = -1
Query:  297 DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 590
            D Y+D++ R+IG+ V +Y+NMVC +LRNS+PK++VYCQVREAKRSLL+ F+ ++G+ E+++L  +L+EDP +MERR  LAKRLELY+ A+ +IDAVAW
Sbjct:  516 DPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.771e-28
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = -1
Query:  297 NPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 611
            +P+ +  D+Y D + RRI + V +YVNMV  +LRN+IPK+ VYCQVR+AK +LL++F++++ K E K+L  LL+EDPA+M+RR   AKRLELY+ A+ EIDAVAW
Sbjct:  518 SPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622          
BLAST of CX299665 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 53/105 (50.48%), Postives = 79/105 (75.24%), Query Frame = -1
Query:  297 NPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 611
            +PT +I D+Y D + R+I + V +Y+ MV  +L N+IPK++V+CQVR+AK SLL++F+ ++ + + KRL  LL+E+PA+MERR   AKRLELY+ A+ EIDA  W
Sbjct:  507 SPTSAI-DQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVW 610          
The following BLAST results are available for this feature:
BLAST of CX299665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SDL5A_SOYBN3.141e-5693.81Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN1.723e-5492.04Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH1.235e-5287.61Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.041e-4780.53Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.267e-3059.18Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH2.771e-2855.24Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH6.387e-2550.48Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC06024H04SK RindPdig24 Citrus clementina cDNA clone C06024H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299665 ID=CX299665; Name=CX299665; organism=Citrus clementina; type=EST; length=629bp
AGAGAGGAACTAGTTTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
GCCGAAAAATTCGTATATTATAGGCAACACATAAGAGTAGCATATGAAAA
CAACAGAACATTTAATAATATCACACAATAAAATATGCCTAATCACACCT
TGACTACTAGTTAGGGTATAGAAATATAATGAAATATCCCGCCGCTTTCT
CCCCTGCATGGCTAGTCATAATTGAAAGAATGACAGTCACCATCAAGCCA
AAATTCGTGAGCTGAAATGGACTGGTAAAATGTTGAACTACTTTGACCAA
GCAACTGCATCAATTTCTGATTGTGCACTCCTGTATAACTCCAACCTTTT
TGCAAGGGCAGATCGTCGCTCCATGACTGCCGGATCTTCATTCAACAGGT
TTGACAATCGTTTTTGCTCCAATTTACCCAATTCAGTGAAGAAATGATCA
AGTAGGCTTCGTTTGGCCTCACGAACTTGACAATAAACGATGGACTTAGG
AATTGAGTTCCGCAGACTTGCACAGACCATATTGACATAAGACAAGACCG
TGGTTCCAATTCTCCTTAGATACGAATCATTGTATCTGTCAAAAATTGAA
TGTGTAGGATTGCCACCCTTGTCAACATC
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