CX299666

Overview
NameCX299666
Unique NameCX299666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig807 contig Ccv1_Contig807:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VATM_DICDI (Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 83/166 (50.00%), Postives = 101/166 (60.84%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFS 502
            LA +S+P ML+ KP  +K  H    Q    + L   +E    +  +                Q+IHTIEFVLGAVSNTASYLRLWALSLAHSELSSVF+E++L+                    A+V VLL+ME+LSAFLHALRLHWVEFQNKFY GDG +F P+S
Sbjct:  643 LALISIPVMLVIKPLFMKRFH---FQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYS 805          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP4_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.278e-34
Identity = 84/186 (45.16%), Postives = 104/186 (55.91%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHD----------------XXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A +SVPWMLL KPFIL+  H+ + Q Q+    +   E+++ D++                                 Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY GDGYKFSPFSF
Sbjct:  646 MALISVPWMLLIKPFILRASHR-KSQLQASRIQEDATENIEGDSSSPSSRSGQRTSADTHGALDDHGEEFNFGDVFVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVMNSGLQTRGWGGIVGVFIIFAVFAVLTVAILLIMEGLSAFLHALRLHWVEFQNKFYVGDGYKFSPFSF 830          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP4_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 90/181 (49.72%), Postives = 103/181 (56.91%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDRHQGQSY-------EALQSTDESLQPDTNHDXXXXXXXXXXXXXXX--QMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL-----LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A VSVPWMLL KPF+L+ +HQ + Q QS+       E   S   S +    H                  Q IHTIE+ LG +SNTASYLRLWALSLAH+ELS V +  V+     L  W                  TV +LLVME LSAFLHALRLHWVEFQNKFYEG G KFSPFSF
Sbjct:  646 IALVSVPWMLLIKPFVLRAKHQ-KSQLQSFTIHEDAVEGDHSGHSSKKTAGAHGMKDGHEEEFNFGDIFVHQAIHTIEYCLGCISNTASYLRLWALSLAHAELSEVLWTMVMSIGLRLQGWAGLVGVFIIFAVFAVL--TVAILLVMEGLSAFLHALRLHWVEFQNKFYEGAGSKFSPFSF 823          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_XENTR (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.532e-31
Identity = 79/185 (42.70%), Postives = 98/185 (52.97%), Query Frame = 2
Query:    8 AFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            A + VPWML+ KP IL+ Q+  R H G               +  E +Q    S+  +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     T+ +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  643 AIICVPWMLVVKPLILRRQYLRRKHLGTHNFGGIRVGNGPTEEDAEIIQHDQLSMHSEEGEEPAMEEVFDFGDTVVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVMHVGLSIRSLGGGIALVFVFSAFATLTIAILLIMEGLSAFLHALRLHWVEFQNKFYMGTGFKFLPFSF 827          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_CHICK (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 79/186 (42.47%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWML+ KP +L+ Q+  R H G               +  E +Q    S   +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LLVME LSAFLHALRLHW+EFQNKFY G G+KF PFSF
Sbjct:  643 VALLCVPWMLVAKPLVLRHQYLRRKHLGTHNFGGIRVGNGPTEEDAEIIQHDQLSTHSEEGEEPTEDEVFDFADTVVYQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHTGLSVRSLAGGFGLVFIFAAFATLTVAILLVMEGLSAFLHALRLHWIEFQNKFYTGTGFKFLPFSF 828          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_BOVIN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Bos taurus GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 80/186 (43.01%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWMLL KP +L+ Q+  R H G               +  E +Q    S   +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  643 VALLCVPWMLLFKPLVLRRQYLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLKVKSLAGGLALFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 828          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_RAT (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 80/186 (43.01%), Postives = 99/186 (53.23%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQH-QDRHQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWMLL KP IL+ Q+ + +H G               +  E +Q    S   +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  643 VAMLCVPWMLLFKPLILRHQYLRKKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSF 828          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_PONAB (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 80/186 (43.01%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWMLL KP +L+ Q+  R H G               +  E +Q    S   +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  642 VALLCVPWMLLFKPLVLRRQYLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDADEPTEDEVFDFGATMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 827          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 80/186 (43.01%), Postives = 98/186 (52.69%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQHQDR-HQG---------------QSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWMLL KP +L+ Q+  R H G               +  E +Q    S   +   +               Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  642 VALLCVPWMLLFKPLVLRRQYLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDADEPSEDEVFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSF 827          
BLAST of CX299666 vs. ExPASy Swiss-Prot
Match: VPP1_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 80/180 (44.44%), Postives = 101/180 (56.11%), Query Frame = 2
Query:    5 LAFVSVPWMLLPKPFILKMQH-QDRHQGQ-SYEALQSTDESLQPDT---NHD-----XXXXXXXXXXXXXXXQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVL---LLAWXXXXXXXXXXXXXXXXXATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSF 505
            +A + VPWMLL KP IL+ Q+ + +H G  ++  ++  +   + D     HD                    Q IHTIE+ LG +SNTASYLRLWALSLAH++LS V +  V+   L                     TV +LL+ME LSAFLHALRLHWVEFQNKFY G G+KF PFSF
Sbjct:  650 VAMLCVPWMLLFKPLILRHQYLRKKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSF 829          
The following BLAST results are available for this feature:
BLAST of CX299666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VATM_DICDI2.502e-3450.00Vacuolar proton translocating ATPase 100 kDa subun... [more]
VPP4_HUMAN7.278e-3445.16V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP4_MOUSE1.621e-3349.72V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP1_XENTR7.532e-3142.70V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CHICK1.285e-3042.47V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_BOVIN1.285e-3043.01V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_RAT1.678e-3043.01V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_PONAB1.678e-3043.01V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_HUMAN1.678e-3043.01V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_MOUSE1.088e-2944.44V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC06024H05SK RindPdig24 Citrus clementina cDNA clone C06024H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299666 ID=CX299666; Name=CX299666; organism=Citrus clementina; type=EST; length=709bp
AGGGTTGGCTTTTGTTTCTGTCCCATGGATGCTGCTTCCAAAGCCTTTTA
TCTTAAAGATGCAACACCAAGACAGGCATCAAGGCCAATCTTATGAAGCA
CTCCAGAGCACAGACGAGTCTCTTCAGCCAGATACAAATCATGATTCCCA
TGGTCATGAGGAATTTGAGTTCAGTGAAGTTTTTGTACATCAGATGATAC
ACACAATTGAGTTTGTACTTGGAGCAGTTTCAAACACAGCTTCTTACCTT
CGATTATGGGCTCTGAGTCTTGCCCACTCGGAACTATCAAGTGTGTTCTA
TGAGAAGGTCCTTCTCCTTGCTTGGGGGTACAATAATATACTTATCCTTA
TTGTTGGCATCATCGTCTTCATATTTGCAACTGTGGGCGTATTGCTGGTG
ATGGAAACTCTTAGTGCTTTCTTGCATGCTTTGCGTCTTCACTGGGTGGA
ATTCCAGAACAAGTTTTACGAAGGAGACGGTTACAAGTTCTCTCCATTTT
CATTTGCATTGCTTGATGATGAAGATGAATGATACACTTGATTGAATAAA
TAGTTACCGTCCGAAGATAATTCAGTTGTGTGTGCATAGCTTTGGGATCT
GTGCTCATTTTTTTAATTTGAACATCATGGAAGAGGTTGATCGGGATGTA
TCTTGTAGAGGCCATTGGAGAAACTTTTTAGCATGCGAGCATTGACCCGT
TCCTTTTCA
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