CX299667

Overview
NameCX299667
Unique NameCX299667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11394 contig Ccv1_Contig11394:745..1464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.169e-93
Identity = 167/236 (70.76%), Postives = 187/236 (79.24%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFL+QWGVIDYSGGYVIH+SSGIAGLTAAYWVGPR  SD+ERFPPNN+              +GFNGG PY+A+I SS+A+LNT++ A+TSLLVWT LDV FFGKPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM+LHKK S +Q++DDTL VFHTHAV           FAEP LC L L  P ++GAFYGG GG QF KQI GALFV AWN+V T
Sbjct:  182 LWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRSASDRERFPPNNILLVLAGAGLLWLGWTGFNGGDPYSANIDSSMAVLNTHICASTSLLVWTILDVFFFGKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWYTMMVLHKKWSFMQRIDDTLGVFHTHAVAGFLGGATTGLFAEPILCSLFLSIPDSKGAFYGGPGGSQFGKQIAGALFVTAWNIVIT 417          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.573e-92
Identity = 160/236 (67.80%), Postives = 188/236 (79.66%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            +WGGGFLYQWGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNV              SGFNGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPGAGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+VDDTLAVF+THAV           FA P LC L LP P TRGAFYGG GG Q LKQ+ GA F+  WN+VST
Sbjct:  167 IWGGGFLYQWGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPGAGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPLPATRGAFYGGNGGKQLLKQLAGAAFIAVWNVVST 402          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.503e-92
Identity = 164/237 (69.20%), Postives = 187/237 (78.90%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLP-EPTRGAFYGGK-GGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFL+ WGV+DYSGGYVIH+SSG+AG TAAYWVGPR   D+ERFPPNNV              +GFNGG PY+A+I SS+A+LNTN+ AATSLLVWTCLDVIFF KPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM++HK+  LLQQVDDTL VFHTHAV           FAEP LC L LP   +RGAFY G+ GG+QF++Q+ GALF+I WN+V T
Sbjct:  190 LWGGGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTGAGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATTGLFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVRQVAGALFIICWNVVVT 426          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.922e-90
Identity = 167/236 (70.76%), Postives = 185/236 (78.39%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFLY+WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPGAGLVQ+WAA+VMGI +GS+PW TMMILHKK +LL +VDDTLAVFHTHAV            A P+L  L    P  RGAFYGG G  Q  KQ+ GA FVIAWNLV T
Sbjct:  174 LWGGGFLYRWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGFNGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATPELFSLESTVPGLRGAFYGG-GIKQIGKQLGGAAFVIAWNLVVT 408          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.246e-89
Identity = 155/236 (65.68%), Postives = 179/236 (75.85%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLP-EPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFL+ WGVIDY GGYVIHVS+GIAG TAAYWVGPR + D+ERFPPNN+              +GFNGG PYAA+  +S+A+LNTN+  A SL+VWTCLDVIFF KPSV+GAVQGM+TGLVCITP AG+VQ WAA+VMG+L+GSIPW TMMILHK+  +LQ+VDDTL VFHTH V           FAEP LC L LP   +RGAFYGG GG QF KQI G LFV+AWN+  T
Sbjct:  186 LWGGGFLFHWGVIDYCGGYVIHVSAGIAGFTAAYWVGPRAQKDRERFPPNNILFTLTGAGLLWMGWAGFNGGGPYAANSVASMAVLNTNICTAMSLIVWTCLDVIFFKKPSVVGAVQGMITGLVCITPAAGVVQGWAALVMGVLAGSIPWYTMMILHKRSKILQRVDDTLGVFHTHGVAGLLGGLLTGLFAEPTLCNLFLPVADSRGAFYGGAGGAQFGKQIAGGLFVVAWNVAVT 421          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.125e-89
Identity = 164/236 (69.49%), Postives = 183/236 (77.54%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFLYQWGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYA +I +SIA+LNTNV+AA SLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +WAAI+MGI  GS+PW +MMILHK+ +LLQ+VDDTLAVFHTHAV           FA P L  +    P  RGAFYGG G  Q  KQI GALFV+ WN+V+T
Sbjct:  183 LWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNITASIAVLNTNVSAAASLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWAAILMGICGGSLPWFSMMILHKRSALLQKVDDTLAVFHTHAVAGLLGGFLTGLFALPDLTAVHTHIPGARGAFYGG-GIAQVGKQIAGALFVVVWNVVAT 417          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 325.094 bits (832), Expect = 2.350e-88
Identity = 157/236 (66.53%), Postives = 181/236 (76.69%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPT-RGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            LWGGGFLYQWGVIDYSGGYVIH+SSG+AG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYA ++ +++A+LNTNV+AATSLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +W+A++MG+ +GS+PW TMMILHKK + L +VDDTLAVFHTHAV            A P+LC L  P P  RG FYG   G Q  KQ+ GALFV  WNL+ T
Sbjct:  187 LWGGGFLYQWGVIDYSGGYVIHLSSGVAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNVTATVAVLNTNVSAATSLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWSAMLMGMFAGSVPWFTMMILHKKSTFLMKVDDTLAVFHTHAVAGILGGVLTGLLATPELCALDCPIPNMRGVFYGSGIG-QLGKQLGGALFVTVWNLIVT 421          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT41_ORYSJ (Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 87/211 (41.23%), Postives = 109/211 (51.66%), Query Frame = 1
Query:  112 VGPRLKSDKERFPPNNVXXXXXXXXXXXXXX-SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV--XXXXXXXXXXXFAEPQLCKLTLPEPTR--GAFY------GGKGGVQFLKQIVGALFVIAWNLVST 711
            VGPR + D+E FPPNNV               +GFNGGAPYAA++ +S+ ++NT++  ATSLLVW  LD   FG+ SVI AVQGM+TGLVC+TP A LV                      LHK+  LL +VDDTLAV HTH V              AEP+  +L   +  R  G  Y       G G  Q   Q+ G  FV+A N+  T
Sbjct:   43 VGPRTEKDREAFPPNNVLLTLAGAGLLLWMGWTGFNGGAPYAANVDASVTVVNTHLCTATSLLVWLLLDSFVFGRLSVISAVQGMITGLVCVTPAARLV----------------------LHKRSRLLARVDDTLAVLHTHGVAGSLSGVLTGLLLLAEPRFARLFFGDDPRYVGLAYAVRDGRAGSGLRQVGVQLAGIAFVVALNVAVT 231          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: Y663_METTH (Putative ammonium transporter MTH_663 OS=Methanobacterium thermoautotrophicum GN=MTH_663 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 77/235 (32.77%), Postives = 117/235 (49.79%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            +WGGGFL Q G +D++GG V+H++SG+A L   Y +G R  +   R  P+N+               GFN G+   A   ++ A L TN AAA  ++ W  +D +  GKP+V+G + G + GLV ITP AG V   AA+++G+++  I ++ +  L  +       DD L VF  H +           FA P + +L       G  YG  G  Q   Q++    V A++ V T
Sbjct:  156 VWGGGFLAQLGALDFAGGTVVHINSGVAALALVYLLGKRKDT---RLLPHNLGYSVIGASLLWFGWFGFNAGSALTAGGLAASAFLVTNTAAAAGMVSWVIMDYLKVGKPTVLGGISGAVAGLVAITPAAGFVTVPAALIIGLVTSVISYLAVSYLKPRLG----YDDALDVFGIHGMSGIWGSVATGLFAAPFINEL-----GTGLIYGNPG--QLTAQVIAVAVVAAYSFVVT 376          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMTB_ECOLI (Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 75/233 (32.19%), Postives = 113/233 (48.50%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG--SIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWN 699
            +WGGG L   G +D++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G+++G   +  VTM+        L +VDD   VF  H V           FA   L  +   E       G   G Q L Q+      I W+
Sbjct:  169 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML------KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAE-------GVTMGHQLLVQLESIAITIVWS 388          
The following BLAST results are available for this feature:
BLAST of CX299667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AMT33_ORYSJ3.169e-9370.76Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
AMT2_ARATH1.573e-9267.80Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT31_ORYSJ3.503e-9269.20Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT21_ORYSJ1.922e-9070.76Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
AMT32_ORYSJ1.246e-8965.68Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
AMT23_ORYSJ2.125e-8969.49Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT22_ORYSJ2.350e-8866.53Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT41_ORYSJ3.449e-3141.23Putative ammonium transporter 4 member 1 OS=Oryza ... [more]
Y663_METTH5.506e-2932.77Putative ammonium transporter MTH_663 OS=Methanoba... [more]
AMTB_ECOLI1.148e-2632.19Ammonia channel OS=Escherichia coli (strain K12) G... [more]

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Properties
Property NameValue
Genbank descriptionC06024H06SK RindPdig24 Citrus clementina cDNA clone C06024H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299667 ID=CX299667; Name=CX299667; organism=Citrus clementina; type=EST; length=720bp
GAGGGTCTTTGGGGTGGTGGCTTCCTTTATCAGTGGGGTGTCATTGATTA
TTCTGGTGGCTATGTTATTCACGTCTCCTCAGGAATTGCCGGTCTCACTG
CCGCCTATTGGGTTGGACCCAGGCTAAAGAGTGACAAAGAGAGGTTTCCT
CCGAATAATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTGTGGATGGG
ATGGTCGGGTTTCAACGGTGGGGCTCCTTATGCTGCTCATATCGCCTCTT
CGATCGCTATTCTAAACACAAATGTAGCGGCGGCCACGAGCCTTCTTGTT
TGGACATGTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTTATCGGAGC
TGTTCAGGGCATGATGACTGGCCTTGTTTGCATCACCCCAGGAGCTGGGC
TGGTACAATCATGGGCGGCTATTGTAATGGGCATTCTTTCTGGTAGCATT
CCGTGGGTAACTATGATGATTCTTCACAAGAAGTGTAGTCTTCTTCAACA
GGTGGATGACACACTGGCTGTGTTTCACACGCACGCGGTGACTGGGCTGT
TGGGCGGGCTACTGACCGGGCTATTTGCGGAGCCACAACTGTGCAAGCTC
ACACTACCAGAGCCCACAAGAGGAGCATTCTACGGGGGGAAAGGCGGGGT
GCAATTTCTGAAGCAGATTGTTGGGGCTCTGTTTGTTATCGCCTGGAATT
TAGTTTCCACACATCATTCT
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