CX299679

Overview
NameCX299679
Unique NameCX299679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12696 contig Ccv1_Contig12696:442..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.147e-27
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    4 AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            A LV++TS+  + LAA+ D+ V LP   EL PF+L P  ST  QM+FGD +A+ +  +R ++   Y  NHP+G++G     KV+D M P  E+P C  GD +   L   ++ GCGC+ ++D ++ L+G FTDGDLRR
Sbjct:  120 AILVAITSMPYSNLAALSDLVVILPSVAELDPFNLIPTNSTTCQMIFGDFLAMLLFHSRGVSLSTYGKNHPSGQVGMKANGKVKDFMFPKTEVPFCHLGDKVSFSLEVFSAYGCGCVCIVDPQFRLMGIFTDGDLRR 256          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.689e-26
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    7 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            +LV +TS   ++LA   D  V LP   EL PF+L P TST  Q++F D +A+ ++  R ++  +Y  NHP+G+IG     KV+D + P  E+P C     + + L  L+S G GC+ V++E++ L+G FTDGDLRR
Sbjct:  120 FLVGITSSPCSSLAVFSDFVVMLPKLEELDPFNLIPTTSTTCQLLFSDLLAMTVLRCRKISLSDYGKNHPSGQIGLKANGKVRDYLSPRTEVPFCSPSITVSEALTVLSSYGYGCVCVVNEQFELLGIFTDGDLRR 255          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis GN=CT_399 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.402e-25
Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    7 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            +LV +T+   ++LAA  D  + LP   EL PF+L P TST  Q++F D +A+ ++  R ++  +Y +NHP+G+IG     KV+D + P  E+P C     + + L  L+S G GC+ V++E + L+G FTDGDLRR
Sbjct:  120 FLVGITAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTTSTTCQLLFSDLLAMTLLRCRKISLSDYGSNHPSGQIGLKANGKVKDYLYPRTEVPFCSPLTTVAESLPTLSSYGYGCVCVVNELFELLGIFTDGDLRR 255          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.087e-25
Identity = 50/135 (37.04%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            ++ +T  E ++LA   D+ + +PV+RE CPF+LAP  S+ + +  GD +A+ +M  +  +++++A  HPAG +G+ L   V+D+    +E+P+ KE   + + ++E+T+KG G   V++EE  L+G  TDGDLRR
Sbjct:  120 VIGITGNEKSSLAKYSDVVLKIPVDREACPFNLAPTVSSTVTLALGDAIAMTLMKLKGFSQEDFAKRHPAGALGRKLRL-VKDLYHTGEEVPIVKEDTSMKEAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRR 253          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_ECOL6 (Arabinose 5-phosphate isomerase OS=Escherichia coli O6 GN=kdsD PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.692e-24
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P  K+   + D L+E+T K  G  ++ D+   + G FTDGDLRR
Sbjct:  126 LICITGCPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_SALTY (Arabinose 5-phosphate isomerase OS=Salmonella typhimurium GN=kdsD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.005e-23
Identity = 49/135 (36.30%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P   +   + D L+E+T K  G  ++ DE   + G FTDGDLRR
Sbjct:  126 LICITGRPESSMARAADVHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_SALTI (Arabinose 5-phosphate isomerase OS=Salmonella typhi GN=kdsD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.005e-23
Identity = 49/135 (36.30%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P   +   + D L+E+T K  G  ++ DE   + G FTDGDLRR
Sbjct:  126 LICITGRPESSMARAADVHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_SHIFL (Arabinose 5-phosphate isomerase OS=Shigella flexneri GN=kdsD PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.312e-23
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P  K+   + D L+E+T K  G  ++ D+   + G FTDGDLRR
Sbjct:  126 LICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_ECOLI (Arabinose 5-phosphate isomerase OS=Escherichia coli (strain K12) GN=kdsD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.312e-23
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P  K+   + D L+E+T K  G  ++ D+   + G FTDGDLRR
Sbjct:  126 LICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_ECO57 (Arabinose 5-phosphate isomerase OS=Escherichia coli O157:H7 GN=kdsD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.312e-23
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ +T    +++A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P  K+   + D L+E+T K  G  ++ D+   + G FTDGDLRR
Sbjct:  126 LICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRR 260          
The following BLAST results are available for this feature:
BLAST of CX299679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y526_CHLPN1.147e-2743.07Uncharacterized protein CPn_0526/CP_0226/CPj0526/C... [more]
Y679_CHLMU3.689e-2641.18Uncharacterized protein TC_0679 OS=Chlamydia murid... [more]
Y399_CHLTR1.402e-2540.44Uncharacterized protein CT_399 OS=Chlamydia tracho... [more]
Y1546_AQUAE9.087e-2537.04Uncharacterized phosphosugar isomerase aq_1546 OS=... [more]
KDSD_ECOL67.692e-2436.30Arabinose 5-phosphate isomerase OS=Escherichia col... [more]
KDSD_SALTY1.005e-2336.30Arabinose 5-phosphate isomerase OS=Salmonella typh... [more]
KDSD_SALTI1.005e-2336.30Arabinose 5-phosphate isomerase OS=Salmonella typh... [more]
KDSD_SHIFL1.312e-2336.30Arabinose 5-phosphate isomerase OS=Shigella flexne... [more]
KDSD_ECOLI1.312e-2336.30Arabinose 5-phosphate isomerase OS=Escherichia col... [more]
KDSD_ECO571.312e-2336.30Arabinose 5-phosphate isomerase OS=Escherichia col... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07001A07SK NTLeaf1 Citrus clementina cDNA clone C07001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299679 ID=CX299679; Name=CX299679; organism=Citrus clementina; type=EST; length=414bp
GGGGCCTACTTGGTGTCGGTGACGTCCGTTGAGGGCAACGCCCTTGCGGC
TGTTTGTGATATGAACGTGCATTTGCCCGTGGAGAGGGAGCTGTGCCCGT
TTGATTTGGCGCCGGTCACCTCGACTGCTATTCAAATGGTGTTTGGGGAC
ACGGTGGCGATTGCGATGATGGGTGCCAGGAATTTGACTAGAGATGAGTA
CGCGGCTAATCACCCTGCTGGAAGGATCGGTAAAAGCTTGATTTTTAAGG
TGCAAGATGTAATGAAGCCGCATAAGGAGCTTCCTGTTTGCAAGGAGGGA
GATTTGATAATGGATCAGCTGGTGGAGCTCACAAGTAAAGGATGTGGGTG
TTTGCTGGTTATTGATGAGGAGTATCACCTGATTGGGACGTTTACTGATG
GTGATCTGCGCCGT
back to top