CX299680

Overview
NameCX299680
Unique NameCX299680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:208..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.703e-83
Identity = 149/176 (84.66%), Postives = 151/176 (85.80%), Query Frame = 2
Query:   17 SHFSRLFSTNST---GGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            S FSR FST ST     YTIVDHTYD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTE+GKIYQRAFGGQSLD GKGGQAYRCACAADRTGHALLHTLYGQAMKHNT
Sbjct:   26 SRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 201          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.032e-81
Identity = 144/170 (84.71%), Postives = 150/170 (88.24%), Query Frame = 2
Query:   26 SRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +RLFST S+  YT+VDH+YD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD+IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD GKGGQAYRCACAADRTGHA+LHTLYGQAMKHNT
Sbjct:   29 ARLFSTASSS-YTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 197          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.456e-79
Identity = 144/179 (80.45%), Postives = 148/179 (82.68%), Query Frame = 2
Query:   11 LRSHFSRLFSTNSTGG----YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            + S  SR FS   + G    YTIVDHTYD                LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSL+ G GGQAYRCACAADRTGHALLHTLYGQAMKHNT
Sbjct:   21 ITSQLSRFFSAPPSAGDKSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQAYRCACAADRTGHALLHTLYGQAMKHNT 199          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 4.695e-70
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 2
Query:   38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            ST+ +  Y ++DHTYD                L+E GFNTACITKLFPTRSHTVAAQGGINAALGNMT+DDWRWH YDTVKGSDWLGDQDAI YM +EAPKAV+ELE++G+PFSRT++GKIYQRAFGGQSL+ GKGGQAYRCA  ADRTGH++LHTLYGQ++KHNT
Sbjct:   41 STSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNT 206          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2
Query:   38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2
Query:   38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 1.414e-66
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 2
Query:   38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            S + +  Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.113e-66
Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2
Query:   14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            R   S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   43 RKDTSAKLSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 4.113e-66
Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 214          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66
Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   55 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 213          
The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
DHSA1_ARATH3.703e-8384.66Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_ORYSJ2.032e-8184.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH1.456e-7980.45Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_SCHPO4.695e-7072.89Probable succinate dehydrogenase [ubiquinone] flav... [more]
DHSA_PONAB1.414e-6669.88Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MACFA1.414e-6669.88Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_HUMAN1.414e-6669.88Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR4.113e-6667.82Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_BOVIN4.113e-6671.70Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MOUSE5.372e-6671.70Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionC07001A08SK NTLeaf1 Citrus clementina cDNA clone C07001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bp
CAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACCAATTCCA
CTGGAGGATACACAATAGTGGATCATACATATGATGCTGTAGTTGTTGGA
GCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGCATGGCTT
CAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCACACTGTTG
CGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGAAGATGAC
TGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGTTAGGTGA
TCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTG
AGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGGAAAAATA
TACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTGTGGAAAAGGTGGGCA
GGCGTACCGATGTGCATGTGCTGCTGACAGAACTGGTCATGCTCTATTGC
ATACCCTCTATGGCCAGGCTATGAAACATAATACA
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