CX299682

Overview
NameCX299682
Unique NameCX299682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299682_ssr482 microsatellite CX299682_ssr482:482..493. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9492 contig Ccv1_Contig9492:847..1396. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX299682 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 ILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 207
            ILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  262 ILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
[Close]
BLAST of CX299682 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 ILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 198
            I+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  262 IMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327
The following BLAST results are available for this feature:
BLAST of CX299682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PER42_ARATH1.968e-2682.61Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH2.666e-1556.06Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC07001A10SK NTLeaf1 Citrus clementina cDNA clone C07001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299682 ID=CX299682; Name=CX299682; organism=Citrus clementina; type=EST; length=550bp
ATATTGGACAACAAGGGCTTGATGATGGTTGATCATCAGCTAGCCACCGA
CAAGAGGACAAGACCTTATGTTAAGAAGATGGCCAAGAGTCAAGACTACT
TCTTCAAGGAATTTTCAAGAGCCATTACTCTCCTTTCTGAGAACAACCCT
CTCACAGGTACAAAGGGTGAGATCCGAAAGGTTTGCAATCTTGCCAACAA
GCTCCACGACAAGTCCTAGCTAGCTAACAGCTGTATTAGCTACAACAAGT
TAATAGCTCCAAATTTTTCTTCCTTGTTTCTTCTATGAGGAAGAAAAGAG
TGTGAGATGAGCTCCCAATAAGATGGTTTTTCTAGATCGGTTTGTTTCCT
GTGAGATGTTCGTATTACTGCTATTATGTTCCTTAGATGTACCGTCCAAT
GTTTAAGCCTAGGCTTTCCTTTTCCTCGATGGTGTGAGCTTGATGTTATT
AATATTCAGTAATGGCAGTGGTAGATGAGGGATGTATGTATGTATGCAGG
GATGGTGTATGGTGCATGGATTTGTATAATGATGATAATTGATGATTCAT
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