CX299683

Overview
NameCX299683
Unique NameCX299683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 3
Query:   15 EQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            ++++ DKSVVCHKQ YP+AVFYCH    T  Y VPLEG +G +AKA AVCH +TSAWNP HLAF+VLKVKPGTVP+CHFLPE H+VW
Sbjct:  303 KKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPLEGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.169e-30
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 3
Query:   30 DKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            D+ V CH + Y YAVF CH T+ TRAY V + G DGT  +A AVCH DT+ WNPKH+AFQVLKVKPGTVP+CHFLP+DH+VW
Sbjct:  344 DQLVACHAEPYAYAVFACHLTRATRAYAVSMAGRDGTGVEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            + CH ++YPYAVF CH T+ TRAY   L G DG   +A AVCHTDT+ WNPKH AFQVL VKPGTVP+CHF+  D +VW
Sbjct:  242 IACHPESYPYAVFMCHLTEATRAYKASLVGKDGAAVEAVAVCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVW 320          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.282e-26
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQ-TTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            + CH ++YPYAVF CH T+ TTRAY   L G DGT  +A AVCHTDTS WNP+H AF VL VKPGTVP+CHF+  D +VW
Sbjct:  502 IACHPESYPYAVFMCHLTEATTRAYKASLVGKDGTAVEAVAVCHTDTSDWNPEHAAFHVLGVKPGTVPVCHFMQPDAVVW 581          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.361e-23
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKA-AAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKK 290
            V CH + YPY V+ CH T  +RAY V +EGA G  A   AAVCHTDTS WNP+H++F++L  KPG  P+CH +P  HI+W  N K
Sbjct:  274 VACHDEAYPYTVYRCHTTGPSRAYTVDMEGARGADAVTIAAVCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIWAKNVK 358          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKA-AAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            V CH + YPY V+ CH T  +RAYMV +EGA G  A   A VCHTDTS WNP+H++F++L  KPG  P+CH +P  HI+W  N
Sbjct:  301 VACHDEAYPYTVYRCHTTGPSRAYMVDMEGARGGDAVTIATVCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIWAKN 383          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEG---ADGTKA-KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKKT 293
            V CH Q YPY V+ CH T   RAYMV +EG    DG +A   A VCHT+TS WNP+H++F++L  KPG  P+CH +P  HIVW  N K+
Sbjct:  321 VACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKS 409          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: EA92_VICFA (Embryonic abundant protein USP92 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.069e-19
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   30 DKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V PGTVP+CHF+      WVPN
Sbjct:  176 DNAVMCHRLNFEKVVFNCHQVRETTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: EA30_VICFA (Embryonic abundant protein VF30.1 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.069e-19
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   30 DKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V PGTVP+CHF+      WVPN
Sbjct:  176 DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: SVF30_VICFA (Unknown seed protein 30.1 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.987e-18
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   30 DKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V  GTVP+CHF+      WVPN
Sbjct:  176 DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWVPN 259          
The following BLAST results are available for this feature:
BLAST of CX299683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RD22_ARATH2.277e-3470.11Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ1.169e-3067.07BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURP5_ORYSJ3.520e-2763.29BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURPH_ORYSJ2.282e-2663.75BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1B_WHEAT2.361e-2354.12Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RAF1A_WHEAT5.261e-2354.22Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURPD_ORYSJ3.410e-2252.81BURP domain-containing protein 13 OS=Oryza sativa ... [more]
EA92_VICFA2.069e-1949.41Embryonic abundant protein USP92 OS=Vicia faba PE=... [more]
EA30_VICFA2.069e-1949.41Embryonic abundant protein VF30.1 OS=Vicia faba PE... [more]
SVF30_VICFA2.987e-1848.24Unknown seed protein 30.1 OS=Vicia faba PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07001A11SK NTLeaf1 Citrus clementina cDNA clone C07001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299683 ID=CX299683; Name=CX299683; organism=Citrus clementina; type=EST; length=591bp
GAATTCGGCACGAGGAGCAGATGGCAGCTGACAAATCAGTAGTGTGCCAT
AAGCAGAACTATCCATATGCTGTATTCTACTGCCATGCAACACAAACCAC
AAGGGCTTACATGGTTCCCTTGGAAGGTGCTGATGGGACAAAAGCCAAAG
CAGCAGCAGTCTGCCACACAGATACATCAGCATGGAACCCCAAGCATTTA
GCTTTTCAAGTGCTCAAAGTTAAGCCAGGAACTGTTCCTATATGTCACTT
CCTTCCTGAGGATCACATTGTCTGGGTTCCCAATAAGAAGACTGGAGAAT
AGAATTTGATCCTCTTATCCCATCTACTTAATCAGCAGAGTTTGAATCAG
TCAGTTCAAGCAGTTATCCATTTAGTTGTACAATAATTTACTTTGAATAC
CCAGTTCAATTTGTTATGCATACATTAAGCTTGCTGTACTTCAAAACTTG
TGTGCCTAGTATTTATCTTATCTACTTATGGAGCTATCTTCAGTCTTACT
TTGCGGCTGGCTGGTGAATCTATTAGAAATCCCTGTGATCACATGAATCA
AATAAATATGATCATCCCATGAACAAAAAAAAAAAAAAAAA
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