CX299689

Overview
NameCX299689
Unique NameCX299689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299689_ssr187 microsatellite CX299689_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:473..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKI+PSTDC  V+
Sbjct:   38 AKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+I+PST+C  V+
Sbjct:   64 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKI+PSTDC +V+
Sbjct:   63 AKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKI+ ST+C  V+
Sbjct:   62 ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKI+PSTDC +V+
Sbjct:   61 ARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKI+ ST+C  V+
Sbjct:   38 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKI+ ST+C  V+
Sbjct:   38 ARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKI+ ST+C  V+
Sbjct:   38 ARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKI+ ST+C  V+
Sbjct:   62 AKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKI+ ST+C  V+
Sbjct:   56 ANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
The following BLAST results are available for this feature:
BLAST of CX299689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LTP1_MORNI1.011e-1564.81Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU5.018e-1562.96Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN1.460e-1462.96Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_MALDO1.907e-1462.96Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_TOBAC1.907e-1468.52Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PRUPE1.907e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR1.907e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUDO9.463e-1461.11Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO2.108e-1357.41Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP4_LENCU4.696e-1362.96Non-specific lipid-transfer protein 4 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionC07001B10SK NTLeaf1 Citrus clementina cDNA clone C07001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299689 ID=CX299689; Name=CX299689; organism=Citrus clementina; type=EST; length=412bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGGCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGGTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGC
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