CX299915

Overview
NameCX299915
Unique NameCX299915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1171 contig Ccv1_Contig1171:313..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.252e-42
Identity = 78/118 (66.10%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 354
            A GGV+P+HTHPAASE+L V  G + AGFI+SS+NTVY +TL  GDIM+FPQGLLH+Q N+G   A+  V+F+ PNPGLQITD+ALFANNL S +VE+ TFLDDA VK+LK +LGG+G
Sbjct:   96 AVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSAIVEKVTFLDDAQVKKLKSVLGGSG 213          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.807e-41
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    7 GGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            GGVIP HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDIM+FPQGLLHFQVN G   AL F SF+SP+PGLQI DFALF N+L ++L+ QTTFLD A +K+LKG+LGGT
Sbjct:   95 GGVIPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.764e-40
Identity = 82/117 (70.09%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            A GGVIP+HTHP ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL DA VK+LKG+LGGT
Sbjct:   95 AGGGVIPLHTHPGASEVLVVIQGTICAGFISS-ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAEVKKLKGVLGGT 210          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.916e-40
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 354
            A  GVIPMHTHP ASE+L V+ G ITAGF+SS AN VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+FNS NPGLQI DFALFAN+L ++LV  TTFLD  TVK+LKG+LGGTG
Sbjct:   92 APKGVIPMHTHPGASEVLFVLTGSITAGFVSS-ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATTVKKLKGVLGGTG 208          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.430e-39
Identity = 81/117 (69.23%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            A GGVIP+HTHP ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL D  VK+LKG+LGGT
Sbjct:   95 AGGGVIPLHTHPGASEVLVVIQGTICAGFISS-ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEEVKKLKGVLGGT 210          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.440e-39
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 354
            A  GVIPMHTHP ASE+L V+ G ITAGFISS AN+VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+F+S +PGLQI DFALFAN LS++LV  TTFL  ATVK LKG+LGGTG
Sbjct:   91 APKGVIPMHTHPGASEVLFVLDGSITAGFISS-ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPATVKTLKGVLGGTG 207          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.435e-39
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    7 GGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            GGV+P HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDI++FPQGLLHFQVN G   A+ F SF+SP+PGLQI DFALF N+L+++L+ QTT LD   +K+LKG+LGGT
Sbjct:   95 GGVVPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.601e-38
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            A GGV+P HTHP ASE+L+V  G I AGF++S  NT Y++TL+KGDIM+FPQGLLHFQVN G   AL F SF S +PGLQI DFALF N+L ++++ QTTFLD A +K+LKG+LGGT
Sbjct:   98 AVGGVVPFHTHPGASEVLIVAQGTICAGFVASD-NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.613e-33
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    7 GGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 354
            GGV+P+HTHPA SE+L V+ G + AGFISSS N VY K + KG + +FPQGLLHFQ N+G   A+ F +++S NPGLQI D+ALFANNL +  V + TFL +A V+RLK   GG+G
Sbjct:  104 GGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTSYVVKGTFLAEAEVRRLKSKFGGSG 219          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.100e-23
Identity = 65/118 (55.08%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFA-LFANNLSSQLVEQTTFLDDATVKRLKGILGGT 351
            A GGVIPMHTHP ASEIL VV G I A FI SS N VY K L  GD+M+FPQGLL FQ  +G   A G       NPGLQI +F   F      + +  TT LD+AT+K+LK  LGGT
Sbjct:   98 APGGVIPMHTHPGASEILNVVEGTILAAFI-SSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPGLQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLKSGLGGT 213          
The following BLAST results are available for this feature:
BLAST of CX299915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GL814_ORYSJ5.252e-4266.10Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
AB19A_PRUPE5.807e-4170.43Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL33_ARATH3.764e-4070.09Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL31_ARATH4.916e-4068.64Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GLP1_SINAL1.430e-3969.23Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_BRANA2.440e-3968.64Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
AB19B_PRUPE5.435e-3966.09Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
ABP20_PRUPE4.601e-3864.10Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL813_ORYSJ2.613e-3357.76Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI1.100e-2355.08Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC07004A01SK SaltLeaf1 Citrus clementina cDNA clone C07004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299915 ID=CX299915; Name=CX299915; organism=Citrus clementina; type=EST; length=529bp
GCAAAGGGTGGCGTAATCCCAATGCACACTCATCCAGCTGCTTCCGAAAT
CCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAG
CTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTTT
CCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCT
CGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACTGATT
TCGCCTTATTTGCCAACAACTTGTCTTCCCAATTGGTGGAGCAGACCACT
TTCCTTGACGATGCTACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCAC
CGGCTAGGCTTATTAGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTT
AATTTCATTTAGTTGCTAATGTATTTGATTGTTGGAATTCACGAGTTAGT
ATTTTCTCTGTTCTCACTTCCCCTATCTTTTCTTCTGAATAAATAAAATT
TCTCTCAAAAAAAAAAAAAAAAAAAAAAA
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