CX299930

Overview
NameCX299930
Unique NameCX299930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299930 vs. ExPASy Swiss-Prot
Match: PYR5_TOBAC (Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum GN=PYR5-6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    3 NTPYSVIYDRGSDIIIVGRGIIKAADPALAAREYRLQGWEAYLAKC 140
            NTP +VI DRGSDIIIVGRGIIKAA+P  AAREYRLQGW+AYL  C
Sbjct:  415 NTPSAVIADRGSDIIIVGRGIIKAANPIEAAREYRLQGWDAYLVNC 460          
BLAST of CX299930 vs. ExPASy Swiss-Prot
Match: PYR5_ARATH (Uridine 5'-monophosphate synthase OS=Arabidopsis thaliana GN=PYRE-F PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.229e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 3
Query:    3 NTPYSVIYDRGSDIIIVGRGIIKAADPALAAREYRLQGWEAYLAKCS 143
            NTP+SVI +RGSDIIIVGRGIIKA +PA  A EYR+QGW AYL KCS
Sbjct:  429 NTPHSVITERGSDIIIVGRGIIKAENPAETAHEYRVQGWNAYLEKCS 475          
The following BLAST results are available for this feature:
BLAST of CX299930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PYR5_TOBAC1.898e-1480.43Uridine 5'-monophosphate synthase (Fragment) OS=Ni... [more]
PYR5_ARATH4.229e-1476.60Uridine 5'-monophosphate synthase OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC07004B05SK SaltLeaf1 Citrus clementina cDNA clone C07004B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299930 ID=CX299930; Name=CX299930; organism=Citrus clementina; type=EST; length=367bp
ATAACACTCCATACTCGGTCATCTATGATAGGGGTAGTGACATAATTATT
GTGGGTCGTGGAATTATAAAGGCAGCAGACCCTGCATTGGCAGCCCGTGA
GTACCGGCTTCAAGGATGGGAGGCCTACTTGGCTAAGTGCAGCTGATCCT
CCATTTAGGTCTGGACTTCTGCTCGCTTCAACGGTTGCGATAATGAACAG
ATGAGTCAAGTTCTGTTTAATATACCATGCATTGGTATGTCTTATGAAAC
CGAGAGAGTTTGAAGCTTTTGGCTGCATTGTACTTATAGTAACTTCTCAA
GTCTGGTAATGCTGCTTGTCTGGTTTTCCCAATGAAACATGGTTGCAAGA
AAAAAAAAAAAAAAAAA
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