CX299962

Overview
NameCX299962
Unique NameCX299962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 4.445e-64
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 2
Query:    2 ELGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 424
            +LGAD+I++VSTN+QD+ EEV KIQ  M TG+DVSFDC GFNKTMSTAL+ATRAGGKVCLVG+   EMTVPLTPAAAREVD+VG+FRY+NTWPLCLEFLRSGKIDVKPLITHRF FSQK+VEEAFETSARGG AIKVMFNL
Sbjct:  226 DLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKVMFNL 366          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 61/139 (43.88%), Postives = 91/139 (65.47%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD I+++S    Q+IA++VE +   +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  214 EVGADFILQISNESPQEIAKKVEGL---LGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 346          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 2
Query:    2 ELGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD I+++S    +  E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  212 EVGADFILEISNESPE--EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 344          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD  ++V+     DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  215 EVGADFTIQVAKETPHDIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGLGLKVM 347          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 60/139 (43.17%), Postives = 89/139 (64.03%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD  ++V     Q+IA +VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  215 EVGADFTIQVGKETPQEIASKVESL---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGVGLKVM 347          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 60/139 (43.17%), Postives = 89/139 (64.03%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  215 EIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  +++KPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  215 EIGADLVLQISKESPQEIAGKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 59/139 (42.45%), Postives = 88/139 (63.31%), Query Frame = 2
Query:    2 ELGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 415
            E+GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + AT +GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPLITHRF    ++  EAFET  + G  +K+M
Sbjct:  215 EIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 2
Query:    2 ELGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL*N 430
            ELGADN++ V     D  E VEKI K +G   DVS D  G+      AL  T+  G V +VG+    + +PL+ A  REVDVVG FR  NT+   L  + SG I +   ITHRF  +  + +EA +  A+ G A+K++ ++ N
Sbjct:  210 ELGADNVLLVRREYTD-EEVVEKIVKLLGDRPDVSIDACGYGSAQRVALLVTKTAGLVLVVGIADKTVELPLSQALLREVDVVGSFRIMNTYQPALAAVSSGAIPLDKFITHRFPLN--KTKEALDL-AKSGAAMKILIHVQN 348          
BLAST of CX299962 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    2 ELGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM---GHLEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 361
            ++GA +I+ +    QD  EE++ I      G+DV+++ AG    + +AL++ R GGK+ +VG+     + + VP    A  E+D+ G+FRY NT+P  +EFL SG +D K L+T ++   Q +
Sbjct:  215 KMGATHIINIRE--QDALEEIKTITN--DRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFI--ADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQ 331          
The following BLAST results are available for this feature:
BLAST of CX299962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDND_VITVI4.445e-6482.98L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_BOVIN7.670e-2443.88Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP1.308e-2342.03Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_RAT2.232e-2343.17Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MOUSE2.232e-2343.17Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_HUMAN3.807e-2343.17Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_MACFA8.481e-2341.73Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB1.447e-2242.45Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_BOMMO1.655e-1839.86Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
DHSO_BACSU1.450e-1434.96Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]

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Properties
Property NameValue
Genbank descriptionC07004E04SK SaltLeaf1 Citrus clementina cDNA clone C07004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299962 ID=CX299962; Name=CX299962; organism=Citrus clementina; type=EST; length=572bp
GGAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGACA
TAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGAT
GTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTCAACAGCACTGAG
TGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGATGGGTCATCTTG
AAATGACTGTCCCACTCACTCCGGCTGCTGCAAGGGAGGTGGATGTGGTG
GGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCTGGAGTTCCTTAG
AAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATAGGTTTGGTTTCT
CCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCTCGTGGTGGTACT
GCAATCAAGGTCATGTTTAATCTGTAAAATACAACGTAAAGTAAACGTTT
GGGCAAAAGATGAAATAAAATGGAATTGTCGCCGAGTAATATGAATCAAA
GTGTAGCATATTACTTTATTTCTATCTATTACAAAATAAAATTCAGATTT
CTCAAAAAAAAAAAAAAAAAAA
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