CX299965

Overview
NameCX299965
Unique NameCX299965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:24..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_AQUAE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Aquifex aeolicus GN=clpX PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.907e-29
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 342
            DLI +G+IPEF+GRFP++ +L  LTED+LV++L EPKNAL KQY++LF +  VKL FTEKALR IAK+A  + TGARGLRAI+E I+ + M+E+P +
Sbjct:  289 DLIRFGMIPEFIGRFPVIATLRELTEDELVRILVEPKNALVKQYQKLFELEGVKLTFTEKALREIAKEAIRRKTGARGLRAIMEDIMADIMFEVPSL 385          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_SYMTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Symbiobacterium thermophilum GN=clpX PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.105e-28
Identity = 58/95 (61.05%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ +GLIPEF+GR PI+V+L AL ED LV++L EPKNAL KQY++L  ++N++L F E+A+R IAK+A  +NTGARGLRAI+E I+T+ MYE+P
Sbjct:  290 DLLKFGLIPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGARGLRAIIEDIMTDVMYEVP 384          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_CHRSD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=clpX PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 58/98 (59.18%), Postives = 79/98 (80.61%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 345
            DL+ +GLIPEFVGR P++ +LT L+E+ L+++LTEPKN+L KQY  LF+M  V+L F E ALR +A KA A+NTGARGLR+ILES+L + MYE+P ++
Sbjct:  294 DLVKFGLIPEFVGRVPVIATLTELSEEALIQILTEPKNSLIKQYVHLFAMEGVELEFREDALRAVAHKAMARNTGARGLRSILESVLLDTMYEVPSLE 391          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_HELMI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=clpX PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 58/95 (61.05%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ +GLIPEFVGR P++V+L AL ED LV++LTEPKNAL KQY++ F ++ V+L FT+ ALR IA++A  +NTGARGLRAILE ++ + MY+IP
Sbjct:  290 DLLKFGLIPEFVGRLPVIVTLDALDEDALVRILTEPKNALVKQYQKFFELDQVQLEFTDDALRAIAQEAIKRNTGARGLRAILEEVMLDVMYDIP 384          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_GEOLS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpX PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.214e-28
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 348
            DL+ YG IPEF+GR P+L SLT L ED LV++LTEPKNAL KQY++LF M  V+L FT+ AL  IAK+A  +NTGARGLRAILE  + + MYEIP   T
Sbjct:  291 DLLKYGYIPEFIGRLPMLASLTELDEDALVQILTEPKNALTKQYQKLFDMEGVRLRFTDGALVSIAKEALKRNTGARGLRAILEGAMLDIMYEIPSQNT 389          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_THETN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermoanaerobacter tengcongensis GN=clpX PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.483e-28
Identity = 60/99 (60.61%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 348
            DL+ +G+IPEF+GR PI+V+L  LT+D LV++LTEPKNAL KQY++LF M+ VKL F +KAL +IA+ A  + TGARGLRAILE I+ + MYEIP  +T
Sbjct:  288 DLLKFGMIPEFIGRVPIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEKKALDLIAEMALERGTGARGLRAILEDIMLDVMYEIPSDET 386          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_HALOH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpX PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ YGLIPEF+GR P++V+L  L E+ LVK+LTEP+NAL KQYK+ F M+NV+L FT +AL  IA+KA  +NTGARGLRA++E  + + MY++P
Sbjct:  289 DLLRYGLIPEFIGRLPVIVTLNELVEEDLVKILTEPRNALVKQYKKFFEMDNVELEFTPEALTAIAQKALERNTGARGLRAVVEEAILDIMYDLP 383          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_ALCBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=clpX PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 348
            DL+ YGLIPEF+GR P++ +L  L+ED L+++LTEP+NAL KQY RLF M  V+L F E AL+ IA KA  + TGARGLR+ILES+L + MY++P +++
Sbjct:  295 DLVKYGLIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQYARLFEMEGVELDFREDALKAIANKAMVRKTGARGLRSILESVLLDTMYQVPSMES 393          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_ALKOO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alkaliphilus oremlandii (strain OhILAs) GN=clpX PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ +GLIPEFVGR P++V+L  L E+ L+K+LTEPKNAL KQYKRLF ++ V L   E+ALR+IAKKA  + TGARGLR I+E I+ + MYEIP
Sbjct:  289 DLLKFGLIPEFVGRLPVVVTLEQLDEEALIKILTEPKNALTKQYKRLFEIDGVHLEIEEEALRLIAKKAIERKTGARGLRGIVEGIMMDTMYEIP 383          
BLAST of CX299965 vs. ExPASy Swiss-Prot
Match: CLPX_VIBPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio parahaemolyticus GN=clpX PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1
Query:   52 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 336
            DL+ YGLIPEF+GR P+  +LT L E+ L+++L EPKNAL KQY  LF + N +L F E ALR IAKKA  + TGARGLR+ILES+L E MYE+P
Sbjct:  296 DLVKYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELP 390          
The following BLAST results are available for this feature:
BLAST of CX299965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_AQUAE2.907e-2960.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYMTH1.105e-2861.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CHRSD1.884e-2859.18ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HELMI2.461e-2861.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOLS3.214e-2862.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THETN5.483e-2860.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HALOH7.161e-2858.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALCBS7.161e-2856.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALKOO1.221e-2762.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBPA1.595e-2761.05ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004E07SK SaltLeaf1 Citrus clementina cDNA clone C07004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299965 ID=CX299965; Name=CX299965; organism=Citrus clementina; type=EST; length=679bp
GTAACTGATGCTGCAGTGACATCGTCTTTGCTTGAATCGGTTGAAAGTTC
TGATCTCATTGCATATGGTCTCATACCAGAATTTGTCGGACGATTTCCAA
TATTAGTTAGCTTGACAGCACTAACAGAGGACCAACTTGTTAAGGTCCTC
ACAGAACCAAAAAATGCTCTGGGTAAGCAGTATAAGAGATTGTTCAGCAT
GAACAATGTCAAATTACATTTTACTGAAAAAGCACTAAGAGTAATTGCCA
AAAAAGCTACAGCTAAGAATACTGGTGCCAGAGGTTTAAGAGCCATACTA
GAAAGCATTCTAACTGAAGCCATGTATGAGATTCCTGATGTTAAGACGGG
AAGTGATGGGGTAGATGCTGTTGTGGTAGATGAGGAGTCGGTGGGGTCAG
TGGATGCCCCTGGATGCGGAGGGAAAATTCTACGTGGAGAAGGTGCATTG
GAGCGTTATCTAGTTGAAGCCGAGCGGAAAGAGTCAGCGGAAAATGCATC
TGAGAGGGAGTTGCAGGAGAGTGAAGCAGAGATCTCAACGAGAGCCATGA
GCATGTAGAAGTAGAAGCACCACGATGATTGTTGAAAGTTGTACAACGCA
TGTCTAATGTTATTTGTAGAAATCATATTCATTAGTTGGTGTAATTATAA
TCCCCTTGTATTACAGGTTCTTGAATTCG
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