CX299971

Overview
NameCX299971
Unique NameCX299971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9 contig Ccv1_Contig9:228..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.430e-24
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   58 VTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            VTCSP +LSPCL  + S AP    CC KLR+QRPCLCGYL+NP+LRQYVNSPNA+++ + CG+P P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.985e-23
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   52 EAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            EAVTC+PTELS C+ A+T  + PS  CC+KL+ Q PCLC Y++NP+L+QYVNSP AK++++ CG+ YP C
Sbjct:   30 EAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   64 CSPTELSPCLA-ALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            C+P +L+PC   AL   A P  ACC +LR Q+ CLCGY R+PN   Y+ SPNA R+ A C +P PRC
Sbjct:    4 CNPAQLTPCAGPALFGGAVPP-ACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   64 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            C P +L+ C +A+     PSG CC  LR Q+ CLC Y+++PN   YV+SP+A+  +  CGIP P C
Sbjct:   37 CEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   64 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            C  ++L+ C +A+ S A PSG CC  LR Q+PC C Y ++P   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   61 TCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            +C+  +L+ C  A+   A P+ ACC+ LR Q+ C C + ++P   +YVNSPNA++ V++CGI  P C
Sbjct:   29 SCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   64 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            C+  +L+ C  A+   A P+ ACC+ LR Q+ C C + ++P   +YVNSPNA++ V++CGI  P C
Sbjct:   30 CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX299971 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   64 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCGIPYPRC 261
            C  ++L+ C +A+ S A PSG CC  LR Q+ C C Y ++P   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CX299971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP2_PRUAR2.430e-2464.71Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP_VIGUN5.985e-2358.57Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_MAIZE3.889e-1452.24Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTP2_HORVU6.633e-1445.45Probable non-specific lipid-transfer protein OS=Ho... [more]
NLT2P_WHEAT3.292e-1342.42Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLTPX_ORYSI9.578e-1341.79Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ1.251e-1242.42Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2G_WHEAT2.787e-1240.91Non-specific lipid-transfer protein 2G OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionC07004F01SK SaltLeaf1 Citrus clementina cDNA clone C07004F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299971 ID=CX299971; Name=CX299971; organism=Citrus clementina; type=EST; length=493bp
GTGATGGTGGTTTTGGTGGCCGTGGCAGCACTAAGCCAAGTGCATGTAGC
AGAGGCAGTGACATGCAGTCCAACAGAGCTGAGCCCATGCTTGGCAGCTC
TCACGTCGTCGGCGCCGCCGTCCGGAGCATGCTGCAACAAGCTGAGGCAG
CAGAGGCCATGCCTTTGTGGGTACCTGAGAAACCCTAATCTGAGGCAATA
TGTTAACTCTCCCAATGCCAAAAGGATTGTTGCAACCTGTGGAATTCCCT
ATCCTCGGTGTTAGGTTTTAACTAAATGTTTTATCAAAAAGCTTGTCATA
AACAAAAAAGTCATAAATAAAAAAGTGTGTTGCAAGATTGATTAGTGAGT
ATTAACGTGGAATATGCTAAAGTTTGTGAGTGACAGATGGCTTGGTTGCC
ATCAATGTACTTCTGAAGATGGAATATATTGTAAAATATATGGATAATGA
ACTGATAATAAGCTGTATTTATGTTAAAAAAAAAAAAAAAAAA
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