CX299972

Overview
NameCX299972
Unique NameCX299972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14565 contig Ccv1_Contig14565:274..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.380e-20
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 2
Query:   14 GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            GRE+EQ L RLGCSPAVP VFIGGELVGGAN+VMSLHLN SLIPMLKR GA+WV
Sbjct:   49 GREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.639e-20
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 2
Query:    8 HEGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            + G+E+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSLIPMLKRVGA+W+
Sbjct:   47 NRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.259e-19
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 2
Query:    8 HEGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            + G+E+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKRVGA+W+
Sbjct:   47 NRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:   14 GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            GRE+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKR GA+W+
Sbjct:   49 GREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    8 HEGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            + G+E+E  L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSLIPMLKR GA+W+
Sbjct:   47 NRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   14 GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            G+E+E  L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKR GA+W+
Sbjct:   49 GKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.542e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   14 GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            G E+E+ L  LGC P VPAVFIG ELVGGANQ+MSL +   L  +L+R GAIW+
Sbjct:   49 GPEIERALVELGCKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXS6_ARATH (Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   14 GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            G+E+E+ L ++GC P+VPAVFIG + +GGANQVM+L +   L  ML+R GAIWV
Sbjct:   49 GQEIEKALVQMGCKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 2
Query:   14 GRELEQDLQRL-GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            G+E+E+ L RL G SPAVPAVFIGG LVG  ++VMSLHL+ +L+P+L+  GA+WV
Sbjct:   49 GKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of CX299972 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 2
Query:   14 GRELEQDL-QRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 175
            GR++E+DL +RLG SP VPAVFI G+LVG  ++VMSLHL   L+PMLK  GAIW+
Sbjct:   50 GRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104          
The following BLAST results are available for this feature:
BLAST of CX299972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GRXS2_ARATH7.380e-2085.19Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH9.639e-2078.57Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH1.259e-1976.79Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH2.147e-1979.63Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH1.818e-1875.00Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRXS3_ARATH1.818e-1875.93Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS1_ARATH2.542e-1261.11Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]
GRXS6_ARATH3.321e-1257.41Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana ... [more]
GRXC1_ORYSJ4.337e-1261.82Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRC15_ORYSJ4.337e-1263.64Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC07004F02SK SaltLeaf1 Citrus clementina cDNA clone C07004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299972 ID=CX299972; Name=CX299972; organism=Citrus clementina; type=EST; length=531bp
AATTCGGCACGAGGGGCGTGAGCTTGAGCAGGATCTTCAAAGGCTCGGTT
GCAGCCCCGCGGTGCCGGCCGTGTTCATCGGCGGTGAGCTGGTTGGTGGA
GCCAATCAAGTCATGAGTCTTCATCTCAATCGGTCTTTGATCCCAATGCT
TAAAAGGGTTGGAGCAATATGGGTCTGATTAAAACTAATTTTTAATCAGT
TACGAATCTTTTTGCGCATCGGGCACTTTTTAATTATAAATTAATAAACA
TGTGATGTGACTTAGCTAGCTTAGTTGCATAATATGACATATTAAGAGGA
TTATTATATACTATATAGGTGTCGGATGTCTTGGTTTTAGTCCTAATGAA
TCTACTAATCACTATGTATCGCGTGAATGTCGTCTTTTTGGTATCGTAAT
GTTGTGGTTTTGTTTGCTAATAAAGTTGCTGTTTTTTTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACCCTCGGGGGGGGGCCCGGT
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