CX299986

Overview
NameCX299986
Unique NameCX299986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299986_ssr377 microsatellite CX299986_ssr377:377..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:296..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.049e-41
Identity = 72/106 (67.92%), Postives = 92/106 (86.79%), Query Frame = 2
Query:    8 HEGPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +E   V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+  +EK++
Sbjct:   67 NEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.793e-40
Identity = 72/99 (72.73%), Postives = 89/99 (89.90%), Query Frame = 2
Query:   29 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I+K++
Sbjct:   72 EKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 71/105 (67.62%), Postives = 89/105 (84.76%), Query Frame = 2
Query:   11 EGPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            E P ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL  +IE+FL
Sbjct:   87 EVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.125e-38
Identity = 68/103 (66.02%), Postives = 89/103 (86.41%), Query Frame = 2
Query:   17 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TL TSI+KFL
Sbjct:   74 PMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 67/101 (66.34%), Postives = 88/101 (87.13%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SIEK+L
Sbjct:   79 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 2
Query:   17 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL
Sbjct:   77 PVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 2
Query:   29 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I+K++
Sbjct:   66 EKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.728e-37
Identity = 65/101 (64.36%), Postives = 87/101 (86.14%), Query Frame = 2
Query:   23 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TLT+S++KFL
Sbjct:   85 VNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.175e-37
Identity = 67/99 (67.68%), Postives = 86/99 (86.87%), Query Frame = 2
Query:   29 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I+K++
Sbjct:   75 EKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of CX299986 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.797e-36
Identity = 64/108 (59.26%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 IRHEGPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 325
            +R E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+IGAVPK+T+  ++EK+L
Sbjct:   32 VRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of CX299986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
TRXM_PEA7.049e-4167.92Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_ORYSJ7.793e-4072.73Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM4_ARATH1.018e-3967.62Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA1.125e-3866.02Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM_SPIOL9.527e-3866.34Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM1_ARATH2.122e-3766.02Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_MAIZE2.772e-3768.69Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM2_ARATH4.728e-3764.36Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_WHEAT6.175e-3767.68Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM_CHLRE1.797e-3659.26Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionC07004G04SK SaltLeaf1 Citrus clementina cDNA clone C07004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299986 ID=CX299986; Name=CX299986; organism=Citrus clementina; type=EST; length=580bp
AATTCGGCACGAGGGGCCTGCTGTGACAGATGCAACATGGCAATCACTTG
TTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGC
GGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATA
TGTGGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAA
TTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAG
AATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTT
GACCACCAGCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGT
TTGCTAGAAACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTA
CTATGCCTTGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGC
CCTTGTATAGTTATGAGGAGATGTGATTGTGTTTCCTGATTCCATTACTA
AAGTTAGTTGTCTATATATTTCTAACTTCTACGAGTAATTTCAATAGAAG
TCTGCTTTTTATAAAAAAAAAAAAAAAAAA
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