CX299990

Overview
NameCX299990
Unique NameCX299990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299990_ssr75 microsatellite CX299990_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14992 contig Ccv1_Contig14992:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299990 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  254 EKWGTHVMGTPAAPTCHPDNKKXXXXXXXXXXDNRAQYNNHHHPYLQYSPVERPS-GSPMESILNVFNSWSNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSHQQDQWL-ELCISPCSCGFCSDRP 727
            +KWGTHVMG PAAP  HPDN++          DN+      + PY+ YSPVE P+  +P+E ++ +F++WS KAET+A N+WHNLKT  S+SE AWGK+NLTAKAI  GGFE++++Q F T  NETLKKTFACYLS         + +S     FCSDRP
Sbjct:   37 KKWGTHVMGAPAAPVAHPDNQQAAAWVAG---DNQ---QTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRP 190          
BLAST of CX299990 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  380 HPYLQYSPVERPSGS---PMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSHQQDQWL-ELCISPCSCGFCSDRP 727
            +PY+  SP E    S    ME++  V   W       + K E+LA N W +L+T  S ++AA G++  + K    GG+E I++QTF T   E L  +FACYLS      +  L IS     +CSD P
Sbjct:   96 NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNP 222          
BLAST of CX299990 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  380 HPYLQYSPVERPSGSPMESILNVFNSW-------SNKAETLANNIWHNLKTNSSVSEAAWGKMNLTAKAIKGGGFETIYKQTFATHQNETLKKTFACYLSHQQDQWL-ELCISPCSCGFCSDRP 727
            +PY+  SP  R   + M+S+ +    W       + KAE LA N W +LKT  SV++AA  ++    K +  GG+E ++KQTF    +E L KT+ACYLS      L  + +S     F SD P
Sbjct:   65 NPYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNP 185          
The following BLAST results are available for this feature:
BLAST of CX299990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GEML5_ARATH1.284e-4152.50GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH1.747e-1436.22GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH7.339e-1336.29GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
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Properties
Property NameValue
Genbank descriptionC07004G08SK SaltLeaf1 Citrus clementina cDNA clone C07004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299990 ID=CX299990; Name=CX299990; organism=Citrus clementina; type=EST; length=727bp
GCCCTTCAAGAATCAAAACCACCGCACGCCTCACAATATTCCAATCAATC
AGGCATAGAATCCCTCAAAGAAGCTCTTTCTTTCTTGCAAATTACTTGGC
TTCAAATTTAAAACCAAAATGAACGGCACCACCACCCAGGAATCAAACCC
TTCTCATCACCAAACATCACTAAGCAGTACTAATCAAGAAATGCAATCTC
ATCAAGCTGCCGGTCCATCATCGTCATCTGGACCAGCAAGCACTGCAAGT
GCTGAGAAATGGGGAACTCATGTAATGGGGACGCCTGCTGCTCCCACGTG
TCATCCGGACAACAAGAAAGCAGCCTTGTGGGGAGCTGGAGCTGCTGGTG
ATAATCGAGCTCAATACAACAATCATCACCACCCGTACCTCCAGTACAGT
CCCGTTGAAAGGCCAAGCGGCAGCCCCATGGAATCTATTCTCAATGTCTT
CAACTCTTGGAGCAACAAGGCTGAGACCTTGGCCAATAACATTTGGCACA
ACCTTAAAACGAACTCATCTGTGTCAGAGGCAGCATGGGGGAAGATGAAT
CTGACTGCCAAAGCAATAAAAGGAGGAGGGTTTGAGACTATATACAAGCA
AACTTTTGCAACCCACCAGAATGAGACTTTGAAGAAGACATTTGCCTGTT
ACCTTTCACATCAACAGGACCAGTGGCTGGAACTCTGTATCTCTCCATGT
TCATGTGGCTTTTGCAGCGATCGCCCC
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