CX299992

Overview
NameCX299992
Unique NameCX299992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 7.787e-119
Identity = 212/244 (86.89%), Postives = 224/244 (91.80%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EESKS+LICNDG+TIQA VVLDATGFSR LVQYDKPYNPGYQVAYGILAEVEEHPFD++KMVFMDWRDSHL NN ELKE NS+IPTFLYAMPFSSNRIFLEETSLVARPG+ M DIQERMVARL HLGIKV+SIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VANAI++ LSS+RS SG  LSA VWKDLWPIERRRQREFFCFGMDILL L      +FFDAF
Sbjct:  195 EESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNVELKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLGMDDIQERMVARLSHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLSSERSHSGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAF 438          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 2.505e-117
Identity = 207/244 (84.84%), Postives = 224/244 (91.80%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EESKS+LICNDG+TIQA VVLDATGFSR LVQYDKPYNPGYQVAYGILAEVEEHPFD++KMVFMDWRDSHL NN++LKE NS+IPTFLYAMPFSSNRIFLEETSLVARPG+ + DIQERMVARL HLGIKV+SIEEDEHC+IPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP+VANAI++ L S+RS SG+ LS  VWKDLWPIERRRQREFFCFGMDILL L      +FFDAF
Sbjct:  197 EESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNTDLKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLRIDDIQERMVARLNHLGIKVKSIEEDEHCLIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAF 440          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.052e-115
Identity = 205/244 (84.02%), Postives = 221/244 (90.57%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EE KS LIC+DGVTI A VVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFD+DKMVFMDWRDSHLN  +EL E N+KIPTFLYAMPFSSNRIFLEETSLVARPG+ M+DIQERMVARL HLGI+++SIEEDE CVIPMGGPLPV+PQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVAN+IV+ L SD  +SG+ LSA+VWKDLWPIERRRQREFFCFGMDILL L      +FFDAF
Sbjct:  200 EEEKSYLICSDGVTIDARVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNGKAELNERNAKIPTFLYAMPFSSNRIFLEETSLVARPGLKMEDIQERMVARLNHLGIRIKSIEEDERCVIPMGGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYLVSDSGLSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAF 443          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.422e-114
Identity = 201/244 (82.38%), Postives = 216/244 (88.52%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EE+KS+LICNDGVTIQA VVLDATGFSRCLVQYDKPY PGYQVAYGILAEVEEHPFD  KMV MDWRDSHL NN ELKE N K+PTFLYAMPFSSN+IFLEETSLVARPG+ M DIQERMVARL HLGIKV+SIEEDEHCVIPMGG LPV+PQRVVG GGTAG+VHPSTGYMVARTLAAAP+VANAI+  L S++ + G+ LSA VWKDLWPIERRRQREFFCFGMDILL L      +FFDAF
Sbjct:  197 EEAKSMLICNDGVTIQATVVLDATGFSRCLVQYDKPYKPGYQVAYGILAEVEEHPFDTSKMVLMDWRDSHLGNNMELKERNRKVPTFLYAMPFSSNKIFLEETSLVARPGLRMDDIQERMVARLNHLGIKVKSIEEDEHCVIPMGGSLPVIPQRVVGTGGTAGLVHPSTGYMVARTLAAAPVVANAIIHYLGSEKDLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAF 440          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.054e-111
Identity = 201/246 (81.71%), Postives = 217/246 (88.21%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLS--SDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EE+ S ++C+DGV IQA+VVLDATGFSRCLVQYDKPYNPGYQVAYGI+AEV+ HPFD+DKMVFMDWRD HL++  ELKE NSKIPTFLYAMPFSSNRIFLEETSLVARPG+ M+DIQERM ARLKHLGI V+ IEEDE CVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVR L   S  S+ G  LSAEVW+DLWPIERRRQREFFCFGMDILL L      +FFDAF
Sbjct:  196 EEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAF 441          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.091e-83
Identity = 145/244 (59.43%), Postives = 189/244 (77.46%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            +E +S ++C+DG  I+A++++DA+GF+   V+YDKP N GYQ+A+GILAEVE HPFDLDKMV MDWRDSHL N   L+ +N K+PTFLYAMPF SN +FLEETSLV+RP +  K+++ RM ARL+H+GI+V+ + EDE C+IPMGGPLPV+PQ V+ IGGT+G++HP+TGYMVART+A AP +A+AI   L S R I G  L  +VW  LWPI+RR  REF+ FGM+ LL L      +FFDAF
Sbjct:  200 QEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKSRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGGTSGLIHPATGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAF 443          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.455e-80
Identity = 144/244 (59.02%), Postives = 184/244 (75.41%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EE +S ++C+DG  I  ++++DA+G++   ++YDKP N GYQVA+GILAEV+ HPFDLDKM+ MDWRDSHL N   L+  N+K PTFLYAMPF  N +FLEETSLV+RP +   +++ RMVARL+HLGIKVRS+ E+E CVI MGGPLP +PQ V+ IGGT+G+VHPS+GYMVAR++A AP++A AIV SL S R I G  L   VW  LWP +RRR RE +CFGM+ LL L      + FDAF
Sbjct:  195 EEFESSIVCDDGRKISGSLIVDASGYASDFIEYDKPRNHGYQVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTRMIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAF 438          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.994e-78
Identity = 141/244 (57.79%), Postives = 182/244 (74.59%), Query Frame = 1
Query:    1 EESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL-TTCH*KFFDAF 729
            EE +S ++C+DG  I+ ++V+DA+GF+   ++YDKP N GYQ+A+G+L EV+ HPFDLDKMV MDWRDSHL N   L+  N+K PTFLYAMPF  N +FLEETSLV+RP +   +++ RMVARL+HLGIKVRS+ E+E CVIPMGGPLP +PQ V+ IGG +G+VHPSTGYMVAR++A AP++A AIV+ L S R I G  L   VW  LWP++RR   E + FGM+ LL L      + FDAF
Sbjct:  195 EEFESSIVCDDGKKIRGSLVVDASGFASDFIEYDKPRNHGYQIAHGVLVEVDNHPFDLDKMVLMDWRDSHLGNEPYLRVNNAKEPTFLYAMPFDRNLVFLEETSLVSRPVLSYMEVKRRMVARLRHLGIKVRSVIEEEKCVIPMGGPLPRIPQNVMAIGGNSGIVHPSTGYMVARSMALAPVLAEAIVKGLGSTRMIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAF 438          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.926e-41
Identity = 86/222 (38.74%), Postives = 128/222 (57.66%), Query Frame = 1
Query:   34 GVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNLT 699
            G  +QA +V+D TG     +Q        YQ AYGI+ +  + P +  + V MD+R  HL+      E     PTFLYAM   ++  F+EETSL A P +P   +++R+  RL   G+ V+ I+ +E+C+ PM  PLP L Q VVG GG A MVHP++GYMV   L  AP +ANAI   L++  S++   L+ + W+ LWP E+ R+   + FG++ L+  +
Sbjct:  126 GQELQARLVVDTTGHQAAFIQRPHSDAIAYQAAYGIIGQFSQPPIEPHQFVLMDYRSDHLS-----PEERQLPPTFLYAMDLGNDVYFVEETSLAACPAIPYDRLKQRLYQRLATRGVTVQVIQHEEYCLFPMNLPLPDLTQSVVGFGGAASMVHPASGYMVGALLRRAPDLANAIAAGLNASSSLTTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFS 342          
BLAST of CX299992 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 96/237 (40.51%), Postives = 142/237 (59.92%), Query Frame = 1
Query:   10 KSLLICNDGVTIQAAVVLDATGF-SRCLVQYDKPY-NPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAP----IVANAIVRSLSSD--RSISGHXLSAEVWKDLWPIERRRQREFFCFGMDILLNL 696
            +SL+ C   V I    V  A+G  S   +QY+        Q AYG+  EV+ +PFD   MVFMD+RD +L ++++  EA  K PTFLYAMP S  R+F EET L ++  +P   ++++++ RL  LG++++ I E+E   IP+GG LP   Q+ +  G  A MVHP+TGY V R+L+ AP    ++AN + +  S +   S S   +S + W  LWP ER+RQR FF FG+ ++L L
Sbjct:  221 QSLVECEGDVVIPCRFVTVASGAASGKFLQYELGSPRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRD-YLRHDAQSLEA--KYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQL 454          
The following BLAST results are available for this feature:
BLAST of CX299992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LCYB_CAPAN7.787e-11986.89Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_SOLLC2.505e-11784.84Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_NARPS1.052e-11584.02Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC4.422e-11482.38Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_ARATH2.054e-11181.71Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
CCS_CITSI3.091e-8359.43Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
CCS_CAPAN5.455e-8059.02Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
NXS_SOLTU2.994e-7857.79Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
LCYB_SYNE72.926e-4138.74Lycopene beta cyclase OS=Synechococcus elongatus (... [more]
LCYE_SOLLC1.452e-4040.51Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]

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Properties
Property NameValue
Genbank descriptionC07004G10SK SaltLeaf1 Citrus clementina cDNA clone C07004G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299992 ID=CX299992; Name=CX299992; organism=Citrus clementina; type=EST; length=736bp
GAAGAGTCCAAATCTTTGTTGATTTGCAATGATGGTGTGACAATTCAGGC
TGCCGTGGTTCTTGATGCTACGGGATTCTCTAGGTGTCTTGTGCAGTATG
ATAAACCCTATAATCCAGGTTACCAAGTGGCATATGGAATACTAGCTGAG
GTAGAAGAGCACCCGTTTGATTTAGACAAGATGGTTTTCATGGATTGGAG
AGATTCGCATCTGAACAACAATTCGGAGCTCAAAGAGGCAAATAGCAAAA
TTCCTACTTTTCTTTATGCCATGCCCTTTTCGTCAAACAGGATATTTCTT
GAAGAGACTTCGCTAGTGGCGCGGCCTGGAGTGCCAATGAAAGATATCCA
GGAAAGAATGGTGGCTAGATTAAAGCACTTAGGCATAAAAGTTAGAAGCA
TTGAAGAGGATGAGCATTGTGTCATTCCGATGGGTGGGCCCCTTCCAGTG
CTTCCTCAAAGAGTTGTTGGAATAGGTGGTACCGCTGGGATGGTGCACCC
TTCAACTGGCTATATGGTGGCAAGGACTTTAGCTGCGGCTCCTATTGTTG
CAAATGCAATCGTTCGAAGCCTCAGTTCTGACAGAAGCATTTCAGGACAC
ANATTGTCTGCTGAAGTTTGGAAAGATTTGTGGCCCATAGAAAGGAGAAG
GCAAAGGGAGTTCTTCTGTTTTGGTATGGATATCCTGCTCAACTTGACTA
CCTGCCACTAGAAGTTTTTCGATGCTTTTTTGATCT
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