CX300001

Overview
NameCX300001
Unique NameCX300001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.036e-16
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  984 YSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct: 1005 YSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  987 YSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  993 YSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  983 YSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  983 YSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  983 YSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.117e-14
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            YSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  986 YSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  920 YPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300001 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:    6 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 125
            Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  920 YPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
The following BLAST results are available for this feature:
BLAST of CX300001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GCSP_SOLTU2.036e-1692.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA5.924e-1687.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH8.554e-1582.50Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH8.554e-1582.50Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_FLATR1.117e-1487.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN1.117e-1487.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR1.117e-1487.50Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSPA_FLAPR1.117e-1487.50Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_LEPIN3.042e-1275.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPIC3.042e-1275.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]

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Properties
Property NameValue
Genbank descriptionC07004H08SK SaltLeaf1 Citrus clementina cDNA clone C07004H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300001 ID=CX300001; Name=CX300001; organism=Citrus clementina; type=EST; length=362bp
AAACATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTTT
GCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCG
CAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGG
CTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTT
TCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGAT
TGTATATATGAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATAC
TGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGCAAAAA
AAAAAAAAAAAA
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