CX300015

Overview
NameCX300015
Unique NameCX300015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1679..2224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 3.418e-31
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL-FMTGKKGIPWSTIGKSTALALLFVQWCK 498
            +PLALF+ Y  Y  +EY+  GLS R+WW N+ M RI++ SAW    +   L+  G SE VFE+T K    SD D+           FD  P F+P T + ++++ A   G  R+    A G     G+G++ C  ++VLCFFPF+RG+ +  G  GIPWS   K++ L  +FV +CK
Sbjct:  584 VPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWSVKLKASLLVAMFVTFCK 760          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.418e-31
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL-FMTGKKGIPWSTIGKSTALALLFVQWCK 498
            +PLALF+ Y  Y  +EY+  GLS R+WW N+ M RI++ SAW    +   L+  G SE VFE+T K    SD D+           FD  P F+P T + ++++ A   G  R+    A G     G+G++ C  ++VLCFFPF+RG+ +  G  GIPWS   K++ L  +FV +CK
Sbjct:  584 VPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWSVKLKASLLVAMFVTFCK 760          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 72/177 (40.68%), Postives = 102/177 (57.63%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFV 486
            I + L  I+ LYTL E++  G SI+SW+V     RI TT +WLF +++  L+  G S+ VF +T+K    +                  D  +  FD S +F+PGT I+LV+LAA A  L+ LQS+   GSGL +    + VV+ F PFL+G+F  GK GIP+ST+ K+  LA LFV
Sbjct:  573 IIITLVGIHCLYTLWEFMNLGFSIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGSLYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLPFLKGMFEKGKYGIPFSTLSKAAFLAALFV 749          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 67/172 (38.95%), Postives = 95/172 (55.23%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD----VDEV-----MFDDSPFFVPGTTIILVHLAAWATGLLR----LQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFV 486
            I LALFL Y  Y  +EY++ GLS+R+WW N+ M RI++ SAWL       L+  G SE VFE+T+K   +SD     DEV      FD SP F+P T + ++++ A   G  R           G G+ ++    +++LC  PF+RGL   G  GIPWS   K++ L  LF+
Sbjct:  615 ITLALFLTYNTYNFVEYMECGLSVRAWWNNHRMQRIISASAWLLAFFTVLLKTIGLSETVFEVTRKEKSTSDGNGQNDEVDPERFTFDASPVFIPVTALTMLNIVAITIGTWRAVFGTTEDVPGGPGISEFMSCGWLLLCLLPFVRGLVGKGSYGIPWSVKLKASLLVALFL 786          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27
Identity = 66/176 (37.50%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVD---------EVMFDDSPFFVPGTTIILVHLAAWATGLLRL----QSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFVQWCK 498
            I LALF+ Y  Y  +E+I+ G S R+ W N+ M RI + SAWL   +   L+  GFSE VFE+T+K   +SD D            FD+S  F+P T + ++ + A A G  R+          G G+ ++    ++VLCF P LRGL  +G+ GIPWS   K+  L  +F+ +CK
Sbjct:  573 IALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSIKMKACLLVAIFLLFCK 748          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.258e-25
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFV 486
            I + L  ++ LY+L E++  G S++SW+ +    RI TT +WLF + +  L+  G S+ VF +T+K    +                  D  +  FD S +F+PGT I+LV+LAA A   + LQ     GSGL +    + VV+ F PFL+G+F  GK GIPWST+ K+  LA+LFV
Sbjct:  573 IVVTLVGMHCLYSLWEFMSLGFSVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGSLYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPFLKGMFEKGKYGIPWSTLSKAAFLAVLFV 749          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.155e-25
Identity = 68/174 (39.08%), Postives = 101/174 (58.05%), Query Frame = 1
Query:   40 LYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQK-------IHRSS-----------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAHG---SGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFVQWC 495
            LY+L +++  G S++SW+V   + RI+ TS+WLF + +  L+  G S+  F I +K       ++ S            ++ +  FD S  F+PGT I+LV+LAA A  L+RLQ S C+HG   SGL +    + VV+ F PFL+GLF  GK  IP ST+ K+  L +LFV +C
Sbjct:  581 LYSLWQFMSLGFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSGLFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEHGKYSIPLSTLSKAAFLTVLFVFFC 754          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.391e-24
Identity = 73/180 (40.56%), Postives = 103/180 (57.22%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI--------------HRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAHG---SGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFV 486
            I + L  ++ LYTL E++  G SI+SW+V+    RIV TS+WLF + +  L+  G S+ VF +++K                R  D     +  FD S +F+PGT I+LV+LAA     + LQ S  +HG   SGLG+    + VV+ FFPFL+GLF  GK GIP ST+ K+  LA+ FV
Sbjct:  572 ITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAKGKYGIPLSTLSKAGFLAVSFV 751          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.099e-24
Identity = 73/181 (40.33%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQK------------------IHRSSDVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFV 486
            I + L  I+ LYTL E++  G S++SW V+  + RIV TS+WLF + +  L+  G SE VF IT+K                  +  +SD+ +  FD S  F+PGT I+LV++AA A   + LQ S  +H   GSGL +    V V++ F PFL GLF  GK G P ST+  +  LA+LFV
Sbjct:  573 ITVTLVGIHCLYTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSLCFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKKGKYGTPLSTLSIAGFLAVLFV 753          
BLAST of CX300015 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 66/186 (35.48%), Postives = 101/186 (54.30%), Query Frame = 1
Query:   10 IPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS--------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAHGSGLGDYFCS----VYVVLCFFPFLRGLFMTGKKGIPWSTIGKSTALALLFVQW 492
            I + L  ++ LYTL +++  G S++SW+V+  + RI+ TS+WLF + +  L+  G S+  F + +K    +                    ++ +  FD S  F+PGT I+LV+LAA A  L+RLQ S  +HG G G           +V+ FFPFL+GLF  GK GIP ST+ K+  L +LF  +
Sbjct:  570 IIVTLVGMHCLYTLWQFMILGFSVKSWYVSQSLWRIIATSSWLFSIQDIILKLLGISKIGFIVAKKNMPETRSGYESKSKPSQGEDDGLKLELGKFEFDSSCHFIPGTFIMLVNLAALAGFLVRLQRSSYSHGGGGGSALAETCGCAMIVMLFFPFLKGLFEHGKYGIPLSTLSKAAFLTVLFASY 755          
The following BLAST results are available for this feature:
BLAST of CX300015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CSLH2_ORYSJ3.418e-3138.98Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI3.418e-3138.98Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLB4_ARATH7.880e-2840.68Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLH3_ORYSJ1.344e-2738.95Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLH1_ORYSJ3.911e-2737.50Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB3_ARATH1.258e-2537.85Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB5_ARATH8.155e-2539.08Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB2_ARATH1.391e-2440.56Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB1_ARATH3.099e-2440.33Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLB6_ARATH9.968e-2335.48Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC07005A11SK SaltLeaf1 Citrus clementina cDNA clone C07005A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300015 ID=CX300015; Name=CX300015; organism=Citrus clementina; type=EST; length=546bp
ACCGTATTGATCCCTCTTGCACTTTTTTTGATCTACAAATTATATACTCT
ATTAGAGTACATTCAAGCTGGTTTATCAATCCGTTCATGGTGGGTTAACA
ATTGTATGGCCCGAATTGTCACAACAAGTGCATGGTTATTTGGTCTTGTA
AACGCCGCGCTCGAGCAGTTTGGATTCTCCGAGGCAGTTTTTGAAATTAC
GCAAAAAATTCATCGATCTAGCGATGTCGATGAAGTGATGTTCGACGACT
CTCCTTTCTTTGTTCCCGGCACCACAATTATTCTGGTGCACCTCGCTGCA
TGGGCTACCGGCTTGCTAAGGTTGCAATCACAATGTGCGCATGGCTCAGG
GCTAGGAGACTACTTTTGCAGTGTGTATGTGGTGCTATGCTTCTTTCCTT
TTTTGCGAGGGCTATTCATGACAGGGAAAAAGGGGATCCCGTGGTCAACC
ATTGGCAAATCAACTGCTTTAGCTCTGCTTTTTGTGCAATGGTGTAAGAT
GATGAGCTCTATGAACTGAGATTTTTATTTTAAGCGGGACAAAATA
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