CX300016

Overview
NameCX300016
Unique NameCX300016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_MARAV (Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.936e-41
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLIA 382
            DDV+NVSGHR+GTAEVESALV+H +             KGQGIY +VTLV+G   S+EL+K LV  VRK+IG  A+PD I WAPGLPKTRSGKIMRRILRKIA+++ D+LGDTSTLADPGVVD+LI+
Sbjct:  518 DDVLNVSGHRLGTAEVESALVAHDKVAEAAVVGYPHDIKGQGIYVYVTLVQGEEPSDELKKELVQWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIAANEHDQLGDTSTLADPGVVDELIS 644          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_XANCP (Acetyl-coenzyme A synthetase OS=Xanthomonas campestris pv. campestris GN=acsA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.639e-40
Identity = 86/126 (68.25%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHRIGTAEVESALVSH +             KGQGIYA+VTL+ G   SEEL K LV  VRK+IG  A+PD + WAPGLPKTRSGKIMRRILRKIA +  D+LGDTSTLADP VVD L+
Sbjct:  516 DDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLIAGETPSEELHKELVSWVRKEIGPIASPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVDSLV 641          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_XANC8 (Acetyl-coenzyme A synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=acsA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.639e-40
Identity = 86/126 (68.25%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHRIGTAEVESALVSH +             KGQGIYA+VTL+ G   SEEL K LV  VRK+IG  A+PD + WAPGLPKTRSGKIMRRILRKIA +  D+LGDTSTLADP VVD L+
Sbjct:  516 DDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLIAGETPSEELHKELVSWVRKEIGPIASPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVDSLV 641          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_XANOM (Acetyl-coenzyme A synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=acsA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.652e-40
Identity = 85/126 (67.46%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHRIGTAEVESALVSH +             KGQGIYA+VTL+ G   S+EL K LV  VRK+IG  A+PD + WAPGLPKTRSGKIMRRILRKIA +  D+LGDTSTLADP VVD L+
Sbjct:  516 DDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLIAGETPSDELHKELVSWVRKEIGPIASPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVDSLV 641          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_XANAC (Acetyl-coenzyme A synthetase OS=Xanthomonas axonopodis pv. citri GN=acsA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.652e-40
Identity = 85/126 (67.46%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHRIGTAEVESALVSH +             KGQGIYA+VTL+ G   SE+L K LV  VRK+IG  A+PD + WAPGLPKTRSGKIMRRILRKIA +  D+LGDTSTLADP VVD L+
Sbjct:  516 DDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLIAGQTPSEDLHKELVSWVRKEIGPIASPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVDSLV 641          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_RHILO (Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=acsA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.652e-40
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLIA 382
            DDVINVSGHR+GTAEVESALVSH +             KGQGIY++VTL++G   +E+LRK L+  VRK+IGA A+PDKI +APGLPKTRSGKIMRRILRKIA      LGDTSTLADP VVD LIA
Sbjct:  518 DDVINVSGHRMGTAEVESALVSHDKVSEAAVVGYPHDIKGQGIYSYVTLMKGEEPTEDLRKELIAHVRKEIGAIASPDKIQFAPGLPKTRSGKIMRRILRKIAEDDFSTLGDTSTLADPAVVDDLIA 644          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_CAUCR (Acetyl-coenzyme A synthetase OS=Caulobacter crescentus GN=acsA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.652e-40
Identity = 83/126 (65.87%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHR+GTAE+ESALV+H               KGQG+YA+VTL  G+  ++ LRK LVL VR +IG FAAPD I WAPGLPKTRSGKIMRRILRKIA ++L  LGDTSTLADP VVD L+
Sbjct:  516 DDVINVSGHRLGTAEIESALVAHETVAEAAVVGYPHDIKGQGVYAYVTLKAGIEATDALRKDLVLWVRHEIGPFAAPDVIQWAPGLPKTRSGKIMRRILRKIAENELGSLGDTSTLADPSVVDDLV 641          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_METSB (Acetyl-coenzyme A synthetase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=acsA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.812e-39
Identity = 84/126 (66.67%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHR+GTAEVES+LV+H +             KGQGIYA+VTL+ G+  SEELRK LV  VRK IG  A+PD +H+APGLPKTRSGKIMRRILRKIA  +   LGDTSTLADP VVD LI
Sbjct:  515 DDVINVSGHRLGTAEVESSLVAHIKVAEAAVVGYPHDLKGQGIYAYVTLMTGIEPSEELRKELVSWVRKDIGPIASPDIVHFAPGLPKTRSGKIMRRILRKIAEKEFSALGDTSTLADPSVVDDLI 640          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_ALHEH (Acetyl-coenzyme A synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=acsA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.367e-39
Identity = 84/126 (66.67%), Postives = 94/126 (74.60%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHR+GTAEVESALV H               KGQGIYA+VTL+ GV  S+EL+K LV  V  +IG  A PD I WAPGLPKTRSGKIMRRILRK+A+++LD LGDTSTLADP VVD LI
Sbjct:  514 DDVINVSGHRMGTAEVESALVLHDAVAEAAVVGYPHDIKGQGIYAYVTLMAGVEPSDELKKELVKLVSNEIGPIAKPDVIQWAPGLPKTRSGKIMRRILRKVAANELDSLGDTSTLADPTVVDNLI 639          
BLAST of CX300016 vs. ExPASy Swiss-Prot
Match: ACSA_RHOCA (Acetyl-coenzyme A synthetase OS=Rhodobacter capsulatus GN=acsA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.091e-39
Identity = 84/126 (66.67%), Postives = 94/126 (74.60%), Query Frame = 2
Query:    2 DDVINVSGHRIGTAEVESALVSHSQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASSQLDELGDTSTLADPGVVDQLI 379
            DDVINVSGHR+GTAEVESALV+H Q             KGQGIYA+VTL+ G+  SE+LRK LV  VR +IG  A+PD I WAPGLPKTRSGKIMRRILRKIA +    LGD STLADPGVV +LI
Sbjct:  524 DDVINVSGHRMGTAEVESALVAHPQVAEAAVVGYPHDIKGQGIYAYVTLMNGIEPSEDLRKDLVKWVRTEIGPIASPDLIQWAPGLPKTRSGKIMRRILRKIAENDYGALGDISTLADPGVVQELI 649          
The following BLAST results are available for this feature:
BLAST of CX300016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ACSA_MARAV1.936e-4166.93Acetyl-coenzyme A synthetase OS=Marinobacter aquae... [more]
ACSA_XANCP1.639e-4068.25Acetyl-coenzyme A synthetase OS=Xanthomonas campes... [more]
ACSA_XANC81.639e-4068.25Acetyl-coenzyme A synthetase OS=Xanthomonas campes... [more]
ACSA_XANOM3.652e-4067.46Acetyl-coenzyme A synthetase OS=Xanthomonas oryzae... [more]
ACSA_XANAC3.652e-4067.46Acetyl-coenzyme A synthetase OS=Xanthomonas axonop... [more]
ACSA_RHILO3.652e-4066.93Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=... [more]
ACSA_CAUCR3.652e-4065.87Acetyl-coenzyme A synthetase OS=Caulobacter cresce... [more]
ACSA_METSB1.812e-3966.67Acetyl-coenzyme A synthetase OS=Methylocella silve... [more]
ACSA_ALHEH2.367e-3966.67Acetyl-coenzyme A synthetase OS=Alkalilimnicola eh... [more]
ACSA_RHOCA3.091e-3966.67Acetyl-coenzyme A synthetase OS=Rhodobacter capsul... [more]

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Properties
Property NameValue
Genbank descriptionC07005B01SK SaltLeaf1 Citrus clementina cDNA clone C07005B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300016 ID=CX300016; Name=CX300016; organism=Citrus clementina; type=EST; length=524bp
TGATGATGTCATCAACGTTAGTGGACATCGCATTGGCACAGCAGAAGTCG
AATCTGCTTTAGTTTCTCATTCCCAATGTGCAGAAGCGGCTGTGGTTGGT
GTTGAGCATGAGGTAAAAGGACAGGGTATATATGCATTTGTTACTCTTGT
GGAGGGTGTTCCTTACAGTGAAGAACTCCGGAAGAGCCTTGTTCTTGCTG
TGAGAAAACAGATTGGAGCATTTGCGGCTCCGGACAAAATCCACTGGGCC
CCTGGCCTTCCAAAAACTAGGAGTGGAAAGATAATGAGGAGAATTCTGAG
AAAAATTGCTTCCAGCCAGTTAGATGAACTGGGAGACACTAGCACACTTG
CAGATCCAGGTGTGGTCGATCAACTGATTGCGCTTGCTGATTGCTGAAGA
TCCTAATCTGCATTTTTGTAGCGCATCCATCAGTACCGTGTTTATTATAG
TTATTGTCCCGGAGCATAAGTTACCATGAGCAACCGCTATTCTTTTTCAT
TCACACATTCTGGTCCCTTTTCAA
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