CX300017

Overview
NameCX300017
Unique NameCX300017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300017 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.957e-22
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 2 
Query:  107 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASESIEREYLEYNDTNTVFKGEACDDLGGTFCE 430
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of CX300017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ4.957e-2247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionC07005B02SK SaltLeaf1 Citrus clementina cDNA clone C07005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300017 ID=CX300017; Name=CX300017; organism=Citrus clementina; type=EST; length=623bp
AACACACAACATAAACACAACACAAATATTTAAAATGCAGGCTGCTTTGA
GCATTTCACCAACAACGCTTGTCCCTTTAACAACCTCCAAGAACTTTTCC
CAAGTGGCCATTTATACTCCAAAGCTAGTAGGCAGCTCACTTGCTTCCAG
ACGCAGCGCAATCAAAGTAGCTGCTACAACAAGCAATGACCCGTCCACAT
TTGATTACAATTCTGCCTTCTCGGTGTTTCCAGCAGAGGCATGTGAGGTA
ATCGGTGGAGATGCGTGCTCGGCAGAGATGTATCCTGAGGCGAAGTTGAA
ACCAGAGGCCAAGAACGACACATCAACAACTGCCTCAGAATCCATTGAGA
GAGAGTATTTAGAGTACAACGATACAAACACGGTTTTCAAAGGAGAGGCT
TGTGATGATCTTGGAGGAACGTTCTGTGAACGCGAGTACCAGAGAGGAGT
CTACTAGAACTAGAAAGAACGTAATATCGGGAAACAACTATTTGATGCTT
TTACTGTATATAGTTTACCCCAGTGAACTGGTGTGCATATGGTACAATTT
CCTTTTTCTAAAATATTTTTATTTGATGCTGAAAAAAATCAAAAATGCCT
TTGTGCTAAAAAAAAAAAAAAAA
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