CX300024

Overview
NameCX300024
Unique NameCX300024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.512e-25
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   38 MNQRLCCLIVLFLSVV--PLLAAGDRKGTLVGGWKPIEDPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPS-TKKFEAVVWEKPWEHFKSLTSFKP 382
            M  ++  L++L L VV  PL A+   +   VGGW PI +  +  V+EIG+FAV+EYNKRS+S LKFE+V  GET VVSGTNYRL +   DG   +K + A+VW+KPW  F++LTSF+P
Sbjct:    1 MTSKVVFLLLLSLVVVLLPLYASAAAR---VGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 2
Query:   95 AAGDRKGTLVGGWKPIE-DPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 382
            +  D  G L GG K +  +  +  + E+ +FAV E+N+++ + L FE + K +T VV+GT Y L + VKDG   K +EA VWEKPWE+FK L  FKP
Sbjct:   32 SVADNAGMLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKP 128          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 39/90 (43.33%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  113 GTLVGGWKPIEDPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 382
            G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   +  VV+GT Y   + VK+G + K +EA VWEKPW  FK L  FKP
Sbjct:   44 GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKP 133          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT8_ORYSJ (Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   47 RLCCLIVLFLSVVPLLAA---GDR-KGTLVGGWKPIEDPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKD-GPSTKKFEAVVWEKPWEHFKSLTSFKP 382
            R+  L+ L L+V    AA   G+R  G LVGGW PI D  + H+ E+G +AV  +   S   L+F  V  GE  VVSG NYRL++   D   +T  + AVV+E+ W + + LTSFKP
Sbjct:    3 RIPLLLALLLAVSAAAAAQVGGNRGHGPLVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNYRLVVSASDPAGATASYVAVVYEQSWTNTRQLTSFKP 119          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana GN=CYS4 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   38 MNQRLCCLIVLFLSVVPLLAAGDRKGTLVGGWKPIEDPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKD-GPSTKKFEAVVWEKPWEHFKSLTSFK 379
            M + L CL ++ L +V ++      G L G  KPI++  +  V+ + ++A+ E+NK SK  L F  V +G T VVSGT Y L +  KD G   K +EAVV EK W H KSL SFK
Sbjct:    2 MMKSLICLSLILLPLVSVVEGLGGGGGL-GSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESFK 115          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  110 KGTLVGGWKPIEDPKEKHVME-IGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 379
            K  ++GG   +   +    +E + +FA+ E+NK+    L+F+ + K    VV+GT Y L L  K+G  TK FEA VW KPW +FK L  FK
Sbjct:   31 KTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEFK 121          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  110 KGTLVGGWK--PIEDPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 382
            +G L+GG +  P     +   +E+ +FAV E+N ++ + L+FE + K    VV+G  +   + VK+G + K +EA VWEK WE+FK L  FKP
Sbjct:   13 RGVLLGGVQDAPAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKP 105          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  173 IGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 379
            + +FAV E+NK+  + L+F  V   +  VVSGT Y + L  KDG   K +EA VWEKPW +FK L  FK
Sbjct:   22 LARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFK 90          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT6_ORYSJ (Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   89 LLAAGDRKGTLVGGWKPIEDPKEKHVMEIGQFAVTEYNKRSKS-ALKFESVEKGETXVVSGTNYRLILVVKDGPS--TKKFEAVVWEKPWEHFKSLTSF 376
            LLAA      L  GW PI++  + H+ E+G++A+TE N+ S S  L F  V  GE  VVSG NYRL +    G    T  + AVV+E+ W + + L SF
Sbjct:    9 LLAAVCAAAALPRGWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTGSYGAVVFEQEWSNTRKLISF 107          
BLAST of CX300024 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   98 AGDRKGTLVGGWKPIE-DPKEKHVMEIGQFAVTEYNKRSKSALKFESVEKGETXVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSF 376
            A  + GT+VGG + I+ +  +  V  + +FAV E+NK     L+++ +   +T VV+GT + L + V DG + K +EA V EK WE+ K L SF
Sbjct:    2 ADQQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESF 95          
The following BLAST results are available for this feature:
BLAST of CX300024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CYT5_ARATH1.512e-2551.69Cysteine proteinase inhibitor 5 OS=Arabidopsis tha... [more]
CYT1_MAIZE2.586e-1744.33Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYT1_ORYSJ3.377e-1743.33Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT8_ORYSJ5.760e-1742.74Cysteine proteinase inhibitor 8 OS=Oryza sativa su... [more]
CYT4_ARATH4.128e-1542.61Cysteine proteinase inhibitor 4 OS=Arabidopsis tha... [more]
CYT3_ARATH1.468e-1239.56Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT1_HORVU1.468e-1238.71Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
CYTI_VIGUN1.243e-1147.83Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ORYSJ2.120e-1141.41Cysteine proteinase inhibitor 6 OS=Oryza sativa su... [more]
CYT1_ARATH4.723e-1138.30Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC07005B12SK SaltLeaf1 Citrus clementina cDNA clone C07005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300024 ID=CX300024; Name=CX300024; organism=Citrus clementina; type=EST; length=526bp
ACGGACTTTGGTGTGAACGGTTACCAAAACAACGAAAATGAACCAACGTC
TTTGCTGTCTTATTGTTCTCTTTCTCTCCGTGGTCCCTCTCCTGGCCGCC
GGCGACCGTAAAGGAACGTTGGTTGGGGGATGGAAGCCGATAGAGGACCC
CAAGGAGAAGCACGTGATGGAGATCGGGCAGTTCGCGGTGACGGAGTACA
ACAAACGGTCAAAGAGCGCGTTGAAGTTCGAGAGCGTGGAGAAGGGCGAG
ACTCANGTGGTTTCCGGCACCAATTACCGGCTGATCTTGGTCGTCAAGGA
CGGACCTTCGACCAAGAAATTTGAAGCTGTCGTTTGGGAGAAGCCATGGG
AGCATTTCAAGAGTCTCACCTCGTTTAAGCCTTTTGTTAAATAGGGTGTT
TAACAAATAACAATGCATGTAATCTCAGATTGATAATTATTAAGGTTTTC
GTTATGTGAGTGATGATATTATTATATTGTTTATGAATCTCAAAGGCGAG
TCTTTCAGAAAAAAAAAAAAAAAAAA
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