CX300026

Overview
NameCX300026
Unique NameCX300026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig56 contig Ccv1_Contig56:76..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300026 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:   45 SMAKNPASTRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 332
            ++AK P++T  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
[Close]
BLAST of CX300026 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 3 
Query:   33 LLPTSMAKNPASTRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 332
            L  T++ K   S R  +  L+V   A  ++ E+V M  + K E + NGRRE++F                 + EPKRG+ +AKK YAPVCVTMPTARICR
Sbjct:   11 LSTTNLTKG--SPRITQRRLVVANAAKGAQVESVQMSGERKTEGN-NGRREMMFAAAAAAICSVAGVA---TAEPKRGSAEAKKAYAPVCVTMPTARICR 104
The following BLAST results are available for this feature:
BLAST of CX300026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PST2_ARATH9.684e-1242.71Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
PST2_GOSHI3.680e-1142.00Photosystem II 5 kDa protein, chloroplastic OS=Gos... [more]
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Properties
Property NameValue
Genbank descriptionC07005C02SK SaltLeaf1 Citrus clementina cDNA clone C07005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300026 ID=CX300026; Name=CX300026; organism=Citrus clementina; type=EST; length=476bp
ACATGGCTTCGATGACCATGGCAGCAGCCTCATTACTGCCCACAAGCATG
GCCAAAAACCCAGCATCAACAAGAGCGAAGAGAGGAGGCCTCATCGTTGT
GGCCAAGGCTGCATCATCAAAAGCTGAAAATGTGAGCATGGAATTCAAGA
ACAAGGATGAGAGCAGCAGCAACGGAAGAAGGGAGCTTGTGTTTGCAGCA
GCAGCTGCAGCAGCTTGCTCCATTGCAAAAGTTGCAATGGCTGAATCTGA
GGAGCCCAAACGAGGGACCCCAGATGCTAAGAAGAAGTATGCTCCTGTTT
GTGTCACAATGCCTACTGCTAGAATCTGTCGCAAGTGAGAATGTTTTTTA
ATTTTCATGCTGTTGATGTTAATTAGTGTCCAATTAATTGATATGAGATC
AATGTTAAAAGCTGTGAGCATCTGTATCTTGTAATTGGAGAATCCTGTTT
ATTTAAAAAAAAAAAAAAAAAAAAAA
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