CX300027

Overview
NameCX300027
Unique NameCX300027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10761 contig Ccv1_Contig10761:173..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 2
Query:    2 DHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 166
            DHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:   28 DHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 2
Query:    2 DHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 166
            DHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:   28 DHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    2 DHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 166
            DHA+VQINIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:   28 DHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.675e-19
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    2 DHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 163
            DHA+VQINIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:   28 DHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.720e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 DHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 142
            DHAAVQIN+GHVD + G+YTG ++TFALCGFVR+ G+ D+A++RL  K
Sbjct:   28 DHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75          
BLAST of CX300027 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 DHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKK 145
            DHA+VQINIGHV+A+GIY G+ + FA CGF+R  G  D+A++RL Q+K
Sbjct:   25 DHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72          
The following BLAST results are available for this feature:
BLAST of CX300027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RS211_ARATH7.163e-2280.0040S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS212_ARATH2.084e-2178.1840S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS21_ORYSJ1.951e-1974.5540S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE5.675e-1974.0740S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
RS21_CYAPA6.720e-1264.5840S ribosomal protein S21 OS=Cyanophora paradoxa G... [more]
RS21_DICDI4.355e-1160.4240S ribosomal protein S21 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionC07005C03SK SaltLeaf1 Citrus clementina cDNA clone C07005C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300027 ID=CX300027; Name=CX300027; organism=Citrus clementina; type=EST; length=394bp
GGATCACGCCGCTGTCCAGATCAACATCGGGCACGTTGATGCTGATGGCA
TTTACACCGGTCAATTCTCCACTTTCGCTCTCTGCGGCTTCGTCCGCGCT
CAGGGTGACGGTGACAGCGCCATTGACAGGCTTTGGCAAAAGAAGAAAGT
TGAGGTCCGACAACAATAATTTTCCATTAAAGCAAGTTATGTGTCTTCTC
TAGCAGTTGTCTTCTTCTGCAAGGGTTGGAATGTGATTGCAACGACTCGT
TTGTTCTAGTTTTACTTATGTGGACCATGTTGAAATTTACTTCTGCTTTT
GGACCATGATTAGCACTTAGTTTGTTTATCTGTCGAACTTAATATATGGT
CACGATTTGCTTTACAGCTAAAAAAAAAAAAAAAAAAAAAAAAA
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