CX300028

Overview
NameCX300028
Unique NameCX300028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300028_ssr182 microsatellite CX300028_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.099e-38
Identity = 77/101 (76.24%), Postives = 80/101 (79.21%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            RLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV+RVWGIGRY
Sbjct:  227 RLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.807e-37
Identity = 76/101 (75.25%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            RLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV RVW IGRY
Sbjct:  227 RLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.347e-36
Identity = 75/101 (74.26%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            +LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  228 KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.709e-36
Identity = 73/101 (72.28%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            +LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  228 KLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.836e-34
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            +LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WSADGSTLFSGYTDG+IRVWGI RY
Sbjct:  228 KLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.398e-34
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            +LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WSADGSTLFSGYTDG+IRVWGIGR+
Sbjct:  228 KLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.362e-29
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 303
            RLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWSADGSTL++GYTDG IR++ I  +
Sbjct:  243 RLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 297
            RLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WSADGSTL+SGYTDG IRVW +G
Sbjct:  228 RLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.458e-23
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 LYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 294
            LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  227 LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CX300028 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.458e-23
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 LYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 294
            LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  227 LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CX300028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GBLP_MEDSA6.099e-3876.24Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN8.807e-3775.25Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH3.347e-3674.26Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA5.709e-3672.28Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC1.836e-3469.31Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL2.398e-3468.32Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ1.362e-2960.40Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE2.323e-2963.64Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_RAT1.458e-2354.64Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG1.458e-2354.64Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionC07005C04SK SaltLeaf1 Citrus clementina cDNA clone C07005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300028 ID=CX300028; Name=CX300028; organism=Citrus clementina; type=EST; length=532bp
AGACTCTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCAG
TCCTAATAGGTATTGGTTGTGTGCGGCGACTGAGCAGAGTATAAAGATCT
GGGATTTGGAGAGCAAGAGCATTGTCGAGGATCTTAAGGTTGATCTTAAG
ACCGAGGCCGAGAAATCTGAGGCCACCACCGCCACCACCACCATAAAAAA
GAAGAACATTTACTGCACAAGCTTGAACTGGAGTGCTGATGGAAGCACCT
TGTTCAGTGGTTATACAGATGGTGTGATCAGAGTCTGGGGTATTGGCCGT
TATTGAAAACTGCTTGAGTAATTGCAAACTGCTGTTCTTTTTCGATTACA
AACTAGTTTCTCGACTTTGTAGGCAGTTTCAGACCTATTTAAGATTTAAG
ATTTTGTTCAAAATGTTTTTAAGGATATTTTGTTCTCTTTATTTGGATCT
TATATGGCTTTGAGGCCTCTGCTGTTTTGGTTTGGCTTATTATTATTTTA
GATGTGTTACATTACAAAAAAAAAAAAAAAAA
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