CX300031

Overview
NameCX300031
Unique NameCX300031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11580 contig Ccv1_Contig11580:1031..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.602e-30
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDENDDM 223
            GKLYIHF+V+FP+SL+P+QCK LE VLPPRTSVQL+DMELDECEETTLHDVNIEEEMRRKQ  AQEAYDE++DM
Sbjct:  330 GKLYIHFSVEFPDSLNPEQCKALEGVLPPRTSVQLSDMELDECEETTLHDVNIEEEMRRKQ--AQEAYDEDEDM 401          
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.074e-28
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQ-QAAQEAYDENDD 220
            GKLYIHF+VDFP+SL+PDQCK LE+VLP R + +LTDME+DECEETT+HDVNIEEEMRRKQ Q AQEAYDE+D+
Sbjct:  332 GKLYIHFSVDFPDSLTPDQCKALESVLPSRNASRLTDMEIDECEETTMHDVNIEEEMRRKQHQQAQEAYDEDDE 405          
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.797e-27
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQ-QAAQEAYDENDD 220
            GKLYI F VDFP+SL+PDQCK++E+VLP   S QLTDME+DECEETT+HDVNIEEEMRRKQ Q AQEAYDE+D+
Sbjct:  311 GKLYIQFLVDFPDSLTPDQCKVIESVLPRSASSQLTDMEIDECEETTMHDVNIEEEMRRKQHQHAQEAYDEDDE 384          
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.292e-26
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDENDD 220
            GKLYIHFTV+FP+SLSPDQ K LE VLP  ++ QL+DME+DECEETTLHDVNIE+EMRRK QA +EAYD++D+
Sbjct:  332 GKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDVNIEDEMRRKAQAQREAYDDDDE 404          
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.758e-26
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQ-QAAQEAYDENDD 220
            GK+YIHFTV+FP+SL+PDQ K LE +LPP+ S+ LT MELDECEETTLH+VNIEEEM+RKQ QA QEAYDE+D+
Sbjct:  332 GKMYIHFTVEFPDSLNPDQVKSLEAILPPKPSMSLTYMELDECEETTLHNVNIEEEMKRKQTQAQQEAYDEDDE 405          
BLAST of CX300031 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.426e-25
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 2
Query:    2 GKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDENDD 220
            GKLYIHFTV+FPESLSPDQ K +E VLP  T   ++DME+D+CEETTLHDVNIE+EM+RK QA +EAYD++++
Sbjct:  333 GKLYIHFTVEFPESLSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVNIEDEMKRKAQAQREAYDDDEE 405          
The following BLAST results are available for this feature:
BLAST of CX300031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DNJH_CUCSA5.602e-3083.78DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH2_ALLPO3.074e-2878.38DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNJH1_ALLPO5.797e-2777.03DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNAJ3_ARATH1.292e-2673.97Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNJH_ATRNU3.758e-2674.32DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNAJ2_ARATH5.426e-2568.49Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC07005C07SK SaltLeaf1 Citrus clementina cDNA clone C07005C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300031 ID=CX300031; Name=CX300031; organism=Citrus clementina; type=EST; length=351bp
GGGCAAACTGTACATTCATTTCACTGTTGACTTCCCTGAGTCACTGAGCC
CAGACCAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGACCTCAGTC
CAGCTCACCGATATGGAACTGGATGAGTGTGAAGAAACAACCCTGCATGA
TGTGAACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGCTCAGGAGG
CATACGATGAAAATGACGATATGCAAGGTGGTGCCCAGAGAGTGCAGTGT
GCTCAGCAGTGATGATGTAGAAAAAAAGGGGTGGCCTGATTTAGTATTTT
CATTGTTTGGGAGAAAAAGATTCTCAACATATTTATTTTCTGTTATAGGC
T
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