CX300035

Overview
NameCX300035
Unique NameCX300035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12351 contig Ccv1_Contig12351:916..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.108e-61
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            VLDATGFSR LVQYDKPYNPGYQVAYGILAEVEEHPFD++KMVFMDWRDSHL NN ELKE NS+IPTFLYAMPFSSNRIFLEETSLVARPG+ M DIQERMVARL HLGIKV+SIEEDEHCVIPM
Sbjct:  214 VLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNVELKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLGMDDIQERMVARLSHLGIKVKSIEEDEHCVIPM 338          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 3.596e-61
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFD+DKMVFMDWRDSHLN  +EL E N+KIPTFLYAMPFSSNRIFLEETSLVARPG+ M+DIQERMVARL HLGI+++SIEEDE CVIPM
Sbjct:  219 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNGKAELNERNAKIPTFLYAMPFSSNRIFLEETSLVARPGLKMEDIQERMVARLNHLGIRIKSIEEDERCVIPM 343          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.367e-60
Identity = 110/125 (88.00%), Postives = 119/125 (95.20%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            VLDATGFSR LVQYDKPYNPGYQVAYGILAEVEEHPFD++KMVFMDWRDSHL NN++LKE NS+IPTFLYAMPFSSNRIFLEETSLVARPG+ + DIQERMVARL HLGIKV+SIEEDEHC+IPM
Sbjct:  216 VLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNTDLKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLRIDDIQERMVARLNHLGIKVKSIEEDEHCLIPM 340          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.045e-60
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            VLDATGFSRCLVQYDKPY PGYQVAYGILAEVEEHPFD  KMV MDWRDSHL NN ELKE N K+PTFLYAMPFSSN+IFLEETSLVARPG+ M DIQERMVARL HLGIKV+SIEEDEHCVIPM
Sbjct:  216 VLDATGFSRCLVQYDKPYKPGYQVAYGILAEVEEHPFDTSKMVLMDWRDSHLGNNMELKERNRKVPTFLYAMPFSSNKIFLEETSLVARPGLRMDDIQERMVARLNHLGIKVKSIEEDEHCVIPM 340          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.671e-58
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            VLDATGFSRCLVQYDKPYNPGYQVAYGI+AEV+ HPFD+DKMVFMDWRD HL++  ELKE NSKIPTFLYAMPFSSNRIFLEETSLVARPG+ M+DIQERM ARLKHLGI V+ IEEDE CVIPM
Sbjct:  215 VLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPM 339          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.373e-44
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            ++DA+GF+   V+YDKP N GYQ+A+GILAEVE HPFDLDKMV MDWRDSHL N   L+ +N K+PTFLYAMPF SN +FLEETSLV+RP +  K+++ RM ARL+H+GI+V+ + EDE C+IPM
Sbjct:  219 IVDASGFASSFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKSRMAARLRHMGIRVKRVIEDEKCLIPM 343          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.589e-43
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            V+DA+GF+   ++YDKP N GYQ+A+G+L EV+ HPFDLDKMV MDWRDSHL N   L+  N+K PTFLYAMPF  N +FLEETSLV+RP +   +++ RMVARL+HLGIKVRS+ E+E CVIPM
Sbjct:  214 VVDASGFASDFIEYDKPRNHGYQIAHGVLVEVDNHPFDLDKMVLMDWRDSHLGNEPYLRVNNAKEPTFLYAMPFDRNLVFLEETSLVSRPVLSYMEVKRRMVARLRHLGIKVRSVIEEEKCVIPM 338          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.192e-42
Identity = 79/125 (63.20%), Postives = 100/125 (80.00%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            ++DA+G++   ++YDKP N GYQVA+GILAEV+ HPFDLDKM+ MDWRDSHL N   L+  N+K PTFLYAMPF  N +FLEETSLV+RP +   +++ RMVARL+HLGIKVRS+ E+E CVI M
Sbjct:  214 IVDASGYASDFIEYDKPRNHGYQVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITM 338          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 2
Query:   68 QVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            Q AYG+  EV+ +PFD   MVFMD+RD +L ++++  EA  K PTFLYAMP S  R+F EET L ++  +P   ++++++ RL  LG++++ I E+E   IP+
Sbjct:  261 QTAYGVEVEVDNNPFDPSLMVFMDYRD-YLRHDAQSLEA--KYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPV 360          
BLAST of CX300035 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:    2 VLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPM 376
            V+D TG     +Q        YQ AYGI+ +  + P +  + V MD+R  HL+      E     PTFLYAM   ++  F+EETSL A P +P   +++R+  RL   G+ V+ I+ +E+C+ PM
Sbjct:  134 VVDTTGHQAAFIQRPHSDAIAYQAAYGIIGQFSQPPIEPHQFVLMDYRSDHLS-----PEERQLPPTFLYAMDLGNDVYFVEETSLAACPAIPYDRLKQRLYQRLATRGVTVQVIQHEEYCLFPM 253          
The following BLAST results are available for this feature:
BLAST of CX300035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LCYB_CAPAN2.108e-6190.40Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS3.596e-6188.00Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_SOLLC1.367e-6088.00Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_TOBAC3.045e-6088.00Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_ARATH1.671e-5885.60Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
CCS_CITSI1.373e-4464.00Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU2.589e-4364.00Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN2.192e-4263.20Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYE_SOLLC2.207e-1843.69Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
LCYB_SYNE72.440e-1736.00Lycopene beta cyclase OS=Synechococcus elongatus (... [more]

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Properties
Property NameValue
Genbank descriptionC07005C11SK SaltLeaf1 Citrus clementina cDNA clone C07005C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300035 ID=CX300035; Name=CX300035; organism=Citrus clementina; type=EST; length=377bp
GGTTCTTGATGCTACGGGATTCTCTAGGTGTCTTGTGCAGTATGATAAAC
CCTATAATCCAGGTTACCAAGTGGCATATGGAATACTAGCTGAGGTAGAA
GAGCACCCGTTTGATTTAGACAAGATGGTTTTCATGGATTGGAGAGATTC
GCATCTGAACAACAATTCGGAGCTCAAAGAGGCAAATAGCAAAATTCCTA
CTTTTCTTTATGCCATGCCCTTTTCGTCAAACAGGATATTTCTTGAAGAG
ACTTCGCTAGTGGCGCGGCCTGGAGTGCCAATGAAAGATATCCAGGAAAG
AATGGTGGCTAGATTAAAGCACTTAGGCATAAAAGTTAGAAGCATTGAAG
AGGATGAGCATTGTGTCATTCCGATGG
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