CX300044

Overview
NameCX300044
Unique NameCX300044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300044 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.550e-67
Identity = 122/157 (77.71%), Postives = 141/157 (89.81%), Query Frame = 2 
Query:    2 DSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVDDPEVLEAIRLTVINNLLQYHPESSSQLAMGVAFGVDPPKQQVDVDIATHISVFDDGPDRSLLLVETADRPGLLVDLVKIITDINVNVESGEFDTE 472
            DSDPDAT+VEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE+LEA+RLT+INN++QYHPE+SSQLA+G  FG +PP + VDVDIATHI ++DDGPDRSLL+VETADRPGLLVDLVKII DIN+ V+SGEFDTE
Sbjct:   84 DSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTE 240
[Close]
BLAST of CX300044 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.550e-67
Identity = 122/157 (77.71%), Postives = 141/157 (89.81%), Query Frame = 2 
Query:    2 DSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKADTGRKVDDPEVLEAIRLTVINNLLQYHPESSSQLAMGVAFGVDPPKQQVDVDIATHISVFDDGPDRSLLLVETADRPGLLVDLVKIITDINVNVESGEFDTE 472
            DSDPDAT+VEIT GDRLG LLDTMNALKNLGLNVVKA+V LDS+GKH K AITK  TGRK+ +PE+LEA+RLT+INN++QYHPE+SSQLA+G  FG +PP + VDVDIATHI ++DDGPDRSLL+VETADRPGLLVDLVKII DIN+ V+SGEFDTE
Sbjct:   84 DSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTE 240
The following BLAST results are available for this feature:
BLAST of CX300044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ3.550e-6777.71Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI3.550e-6777.71Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07005D10SK SaltLeaf1 Citrus clementina cDNA clone C07005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300044 ID=CX300044; Name=CX300044; organism=Citrus clementina; type=EST; length=473bp
AGATTCTGACCCGGATGCAACCGTAGTGGAGATAACCTTTGGCGATCGCC
TTGGAGCTCTTCTTGATACTATGAACGCACTTAAGAACCTTGGGCTGAAT
GTTGTCAAGGCAAATGTTTTTTTGGATTCTTCTGGGAAGCACAACAAGTT
TGCCATTACCAAAGCTGATACTGGTAGGAAAGTTGATGATCCTGAGGTGC
TTGAGGCAATTCGTTTGACAGTTATAAACAATCTACTTCAGTATCACCCG
GAATCAAGTTCCCAGTTGGCAATGGGTGTTGCCTTTGGCGTTGATCCTCC
AAAACAGCAGGTTGATGTGGACATAGCAACCCACATAAGTGTCTTTGATG
ATGGGCCCGACCGAAGTTTGCTTTTGGTGGAGACGGCTGATCGACCTGGA
TTATTGGTGGATCTTGTAAAGATTATCACTGACATCAATGTCAATGTTGA
ATCGGGAGAGTTTGATACTGAGG
back to top