CX300045

Overview
NameCX300045
Unique NameCX300045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9870 contig Ccv1_Contig9870:75..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.668e-56
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE
Sbjct:   16 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 125          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.727e-53
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDE
Sbjct:   16 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDE 125          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.562e-53
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWT+M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDE
Sbjct:   16 YPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDE 125          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 3.938e-52
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDE
Sbjct:   16 YPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDE 125          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.143e-52
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDE
Sbjct:   16 YPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDE 125          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.016e-23
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPGKG  ++R DS++F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA++E K + ++T+
Sbjct:   14 YPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAKKQETQ 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS++F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L + KE  K  K
Sbjct:   14 YPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKEAKKADK 120          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.247e-22
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++   ++ E
Sbjct:   14 YPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESE 122          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.247e-22
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDE 331
            YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++   ++ E
Sbjct:   14 YPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKKAASESE 122          
BLAST of CX300045 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.546e-22
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 325
            YPG+G  F+R DS+VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+   +  KE+ K  K
Sbjct:   14 YPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEKKKADK 120          
The following BLAST results are available for this feature:
BLAST of CX300045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL24_PRUAV7.668e-5696.3660S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_HORVU2.727e-5391.8260S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL24_CICAR3.562e-5390.9160S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL242_ARATH3.938e-5289.0960S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH5.143e-5289.0960S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24_NEUCR5.016e-2348.1560S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_DEBHA1.118e-2247.2260S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24B_SCHPO4.247e-2246.3660S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO4.247e-2246.3660S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_ASHGO5.546e-2246.3060S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC07005D11SK SaltLeaf1 Citrus clementina cDNA clone C07005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300045 ID=CX300045; Name=CX300045; organism=Citrus clementina; type=EST; length=333bp
TTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATTCCCAGGTTTTCC
TCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCA
TCAAAGCTTACATGGACTTCCATGTACAGGAAACAACACAAGAAGGATAT
TGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATT
CAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAGAAAAGGAGGACT
GAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAAT
TAAGGAGAGGATCAAGAAGACCAAAGATGAAAA
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