CX300051

Overview
NameCX300051
Unique NameCX300051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300051 vs. ExPASy Swiss-Prot
Match: FKB70_ARATH (70 kDa peptidyl-prolyl isomerase OS=Arabidopsis thaliana GN=ROF1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.878e-17
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:   57 QVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 281
            +VLELE  NVKALYRR+QA+++ S+L+ AE D+K+AL IDPNNR VKL    LK+K +E+ K +A+ +G M +K+
Sbjct:  474 KVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKL 548
[Close]
BLAST of CX300051 vs. ExPASy Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.109e-15
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3 
Query:   57 QVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 281
            +VLEL+  NVKALYRR+QA+ + ++LE AE DIK+AL IDP NR VKL Y  LK+K +E  K  A+ +  M SKM
Sbjct:  475 KVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKDAKFYSNMFSKM 549
The following BLAST results are available for this feature:
BLAST of CX300051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FKB70_ARATH5.878e-1754.6770 kDa peptidyl-prolyl isomerase OS=Arabidopsis th... [more]
FKB70_WHEAT1.109e-1556.0070 kDa peptidyl-prolyl isomerase OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionC07005E05SK SaltLeaf1 Citrus clementina cDNA clone C07005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300051 ID=CX300051; Name=CX300051; organism=Citrus clementina; type=EST; length=439bp
ATTCAAAATATGCATTTATTATGCATACAAATATTGCTTTGCTTCATTTT
GACTGACAGGTCTTAGAACTTGAGCCACTAAATGTGAAAGCTCTCTACAG
AAGGTCCCAAGCACACTTGAAAACATCTGAACTTGAAAAAGCTGAGGCTG
ATATTAAGAGGGCTCTAACCATTGACCCAAATAACAGAGTTGTGAAACTT
GTGTACATGGAGCTAAAAGACAAGCAAAGAGAATATGCCAAATATCAAGC
TGAGATTTTCGGTACCATGCTCTCAAAGATGGGTTAGCTGGAAGGAAATG
TTAAATTTCACGATCTTGGTCCGAGCCATCACGGTGTAAACATGAATATG
CTAGTTTGCTAAAATATTACAACTTATCTGAGATTAAAATATATTTAAAC
AAATAAACCATCATTTTTTTAGAAAAAAAAAAAAAAAAA
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