CX300052

Overview
NameCX300052
Unique NameCX300052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:112..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 183
            GNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    6 GNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 186
            GNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    5 GNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 180
            GNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    6 GNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    4 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 180
            NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    7 NCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 183
            NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    7 NCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 183
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 183
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300052 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 183
            GNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX300052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA1.520e-2067.21Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.054e-1759.68Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.966e-1666.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV9.541e-1559.32Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO9.541e-1560.00Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.069e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.069e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.873e-1147.54Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07005E06SK SaltLeaf1 Citrus clementina cDNA clone C07005E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300052 ID=CX300052; Name=CX300052; organism=Citrus clementina; type=EST; length=478bp
GGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAG
CTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTG
TTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGC
CCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAA
CACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGG
GTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTC
GTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGT
CACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATA
TATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTATT
ATTGTTAGTCTAAAAAAAAAAAAAAAAA
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