CX300054

Overview
NameCX300054
Unique NameCX300054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.891e-41
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 2
Query:   59 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 355
            MEFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFY  GG Y+MFAGKDASRAL KMSKN++DV+PSL+GLTEKE+  L+DWE KFEAKYPVVGRVV
Sbjct:    1 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 2
Query:   62 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 352
            E T  +L QY+G+DP KP+ +AIK +++DVT  + FY PGG YA+FAGKDASRALAKMS  + D+T  + GL   E+  L DWE KF +KY  VG V
Sbjct:   74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTV 170          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 2
Query:   62 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 352
            E T  +L  Y+G+D  KP+ +AIKG+++DV+  + FY PGG YA+FAGKDASRALAKMS  D D+T  + GL   E+  L DWE KF +KY  VG +
Sbjct:   70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 2
Query:   65 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 346
            FT  +L +Y+G +  +PIY+A+KG VFDVT+GK FY  G  Y   AGKD+SR +AKMS +  D+T  + GLT KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVG 140          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 2
Query:   65 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 346
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FY  G  Y   AGKD+SR +AKMS +  D+T    GLT KE+  L D + K ++AKYP+VG
Sbjct:   46 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVG 140          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.226e-18
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   65 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 346
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FY  G  Y    GKD++R +AKMS +  D+T    GLT KE+  L + + K ++AKYP+VG
Sbjct:   47 FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVG 141          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   65 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSD-WEKKFEAKYPVVG 346
            FT  +L +Y G +  +PIY+A+KG VFDVT+GK FY  G  Y    GKD++R +AKMS +  D+T    GLT +E+  L D + + ++AKYP+VG
Sbjct:   44 FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVG 138          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae GN=DAP1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   20 TNQTRRSSFVHSSMEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMS------KNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 355
            TN + + S    +  F P  L ++NG D  K I++AI+G+V+D T G+ FY P G Y  FAG DASR LA  S      K+ D     LD LT++++  L +W++ FE KYP +G ++
Sbjct:   29 TNDSNKGSEPVVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENKYPCIGTLI 145          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 2
Query:   62 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDG--------LTEKEMGVLSDWEKKFEAKYPVVGRVV 355
            ++TPA+L +YNG+  S  +++AIKG V++VT G  FY P G Y+ FAG DASR LAK S  DD+  P  D         L ++E   L+DW+  F+ KY  VGR++
Sbjct:   42 DYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS-FDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLI 145          
BLAST of CX300054 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   62 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYVPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 355
            +FTPA+L +++G    + I +AI G+VFDVT G+ FY P G Y +FAG+DASR LA    + +   D    L  LT  +   LSDWE +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLL 171          
The following BLAST results are available for this feature:
BLAST of CX300054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SBP3_ARATH7.891e-4181.82Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
MSBP1_ARATH1.495e-2354.64Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH7.420e-2352.58Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
NENF_RAT3.447e-2050.53Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE1.310e-1950.53Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_HUMAN3.226e-1847.37Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
NENF_BOVIN1.226e-1746.32Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
DAP1_YEAST3.567e-1739.83Damage response protein 1 OS=Saccharomyces cerevis... [more]
DAP1_SCHPO1.770e-1644.34Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
PGRC1_PONAB1.957e-1543.56Membrane-associated progesterone receptor componen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07005E08SK SaltLeaf1 Citrus clementina cDNA clone C07005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300054 ID=CX300054; Name=CX300054; organism=Citrus clementina; type=EST; length=541bp
ACTCTCAGTACGCACCGCTACCAACCAAACCAGACGATCATCGTTCGTTC
ATTCGTCAATGGAATTCACACCGGCTCAGCTGATCCAATACAACGGAACA
GACCCATCAAAACCAATATACGTGGCAATCAAAGGCCGCGTGTTCGACGT
GACAACAGGCAAGTCCTTTTACGTCCCAGGTGGCGCGTACGCGATGTTCG
CAGGCAAAGATGCCAGCAGAGCTTTGGCTAAGATGAGCAAGAATGATGAC
GATGTCACTCCCTCCCTCGATGGCCTCACAGAGAAAGAGATGGGCGTTCT
TAGTGACTGGGAGAAGAAATTCGAAGCTAAGTACCCAGTTGTGGGTCGTG
TTGTTTAATAAATTTTTTATCTTTTTATGAATTTACTTGTTATGATTATG
CATTTTGCGTTTATATGTCTATTTTTTTGTGTTTATTTGTAAGGTGATCT
ACTGAAAGCTCTTATCTTTATGTGGGTATTGAGTGAGGAGTGTGTATGAT
TAAAAGTTTGTAAGGGAATGAATGGTTAATAAATGAATGCG
back to top