CX300058

Overview
NameCX300058
Unique NameCX300058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:1..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  273 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC  ++P L+ELAKKLP V F
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTF 62          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.085e-19
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  273 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC  ++P  ++LAKKLP V+F
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.578e-18
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query:  273 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC  ++PIL+++AKK+P VIF
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIF 68          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.061e-18
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  270 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PC  ++   +ELAKK+P V F
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTF 61          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.745e-17
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  270 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC +++P +SELAKK P V F
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAF 61          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  270 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC  ++P+ +E+AKK   V+F
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  270 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC  ++P+ ++LAKK   V+F
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVF 61          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 3
Query:  282 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC +M+PI ++LAKK PA +F
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVF 74          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  273 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKK 434
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC +++PI ++LAKK
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKK 56          
BLAST of CX300058 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.254e-14
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 3
Query:  282 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCTLMSPILSELAKKLPAVIF 452
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC  ++PI  ELAKK   V+F
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVF 67          
The following BLAST results are available for this feature:
BLAST of CX300058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRXH_RICCO4.907e-2075.00Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.085e-1966.67Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC1.578e-1863.33Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH2_TOBAC2.061e-1868.85Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_FAGES1.745e-1763.93Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH6.631e-1757.38Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH3.291e-1657.38Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT1.633e-1557.89Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH4_ARATH6.207e-1562.96Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_BRARA5.254e-1457.89Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC07005F03SK SaltLeaf1 Citrus clementina cDNA clone C07005F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300058 ID=CX300058; Name=CX300058; organism=Citrus clementina; type=EST; length=453bp
TCTTGACCTGGACACTCAACGTGTTCTTATCGATGATGTTCACACACAAA
AAACACAACTGACATATGAGACTGCGTCACGTATTTATAGAACTCTCTGC
CTTCATACCCAAGAAATAGATATTTCCGATACATATATCAAATTGAACAT
TCGGCGTGCTGCTCGCTATATATAGAGATCCAAGATTGCAAGAGTTCCGT
CACCAAACACAGAAACAGATATAAAGAAATCAGAACAGAGAAGTCATTTA
ACTTGTGATCATAATTAATATGGCCGAGGAGGGACAAGTGATCAGCTGCC
ACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAG
AAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCACGTT
GATGTCTCCAATTTTGAGTGAATTGGCGAAAAAGCTGCCCGCTGTCATAT
TCT
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