CX300062

Overview
NameCX300062
Unique NameCX300062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4205 contig Ccv1_Contig4205:11..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCAP_ARATH (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.458e-47
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 2
Query:  176 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            E LKPAI L+ENALKHL+KMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANARPDDS IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGFSF NPNA
Sbjct:   66 EGLKPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNA 166          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: Y1417_SYNY3 (Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803) GN=slr1417 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.211e-29
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            I L++ ALKHL  ++ ++ +DLCLR+GV+QGGCSGMSY M+FE    A   D V +Y+GF I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA
Sbjct:   12 IQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRATEHDEVFDYEGFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNA 106          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: YCF83_PORPU (Uncharacterized protein ycf83 OS=Porphyra purpurea GN=ycf83 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.878e-27
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  176 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            EE    I LTE A + +  ++S    ++CLRIGVKQGGCSGMSY+M FE+ ++ R  D V+  D F++ CDPKSLL+L+G+ LDYS  LIGGGF F NPNA
Sbjct:    2 EENMNFITLTEPAARQIKILKSNFDNEVCLRIGVKQGGCSGMSYSMNFESVSSLRETDEVLMLDSFLVACDPKSLLYLYGLSLDYSSELIGGGFQFSNPNA 102          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: YCF83_GALSU (Uncharacterized protein ycf83 OS=Galdieria sulphuraria GN=ycf83 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.787e-25
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            I +T++AL HLN +    SED L +RIG+KQGGCSG+SY M +E ++N   +D V +YD F +VCD KS+L+L+G+ LDYS +LI GGF F NPNA
Sbjct:    6 INITKSALDHLNSISKLNSEDKLYIRIGIKQGGCSGLSYFMTYEKKSNISDNDLVYDYDNFTLVCDNKSILYLYGISLDYSSSLIDGGFKFLNPNA 101          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: YCF83_PORYE (Uncharacterized protein ycf83 OS=Porphyra yezoensis GN=ycf83 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.048e-24
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            I +T+ ALK +  ++++   D+ LRIGV+QGGCSGMSY+M FE+    +  D  +  D F +VCDPKSLL+L+G+ LD+S  LIGGGF F NPNA
Sbjct:    8 ITITKPALKQIAILKNDHENDVHLRIGVRQGGCSGMSYSMNFEHVDKLKDTDERLRLDNFSVVCDPKSLLYLYGLSLDFSSELIGGGFQFSNPNA 102          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_METFK (Putative iron-sulfur cluster insertion protein erpA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=erpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.127e-15
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  173 TEELKPAILLTENALKHLNKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            TEE+   ++ T+NA + + ++  E  S DL LR+ V  GGCSG  Y   FE   N   DD+ ++ DG  ++ DP SL +L G ++DY D+L G  F  +NPNA
Sbjct:    5 TEEIPSPLIFTDNAARKVKELIDEEGSPDLKLRVFVSGGGCSGFQYGFTFEETINE--DDTTVDKDGVTLLIDPMSLQYLVGAEIDYQDSLQGSQFVIRNPNA 105          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFM (Iron--sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain M12) GN=erpA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  212 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            A K    ++ E S DL LR+ ++ GGCSG  Y  EF ENRA+   DD V+E DG V++ DP SL +L G ++DY+++L G  F  +NPNA
Sbjct:   30 AAKVRELIQEENSADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLVLETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNA 116          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ERPA1_METCA (Iron-sulfur cluster insertion protein erpA 1 OS=Methylococcus capsulatus GN=erpA1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  185 KPAILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            +PA++ T NA   ++++ +E     L LR+ V  GGCSGM Y   FE   N   DD+ +E DG V++ DP SL +L G ++DY + L G  F  KNPNA
Sbjct:   11 EPALIFTGNAAAKVSELIAEEGNPALKLRVYVSGGGCSGMQYGFAFEEAVNE--DDTTVEKDGVVLLVDPTSLQYLQGAEIDYQEGLEGSRFVIKNPNA 107          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSEDLC-LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 478
            + +TE A  H+  M  E  E+   LR+GVK GGCSG+SY M FE+  +    DSV +  G  ++ D +SL  + G  +DY  +++GGGF+  NPNA
Sbjct:    5 VTITEAAALHIKDMMKEHEEENAFLRVGVKGGGCSGLSYGMGFEHEKSE--SDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNA 98          
BLAST of CX300062 vs. ExPASy Swiss-Prot
Match: ISCA_HAEIN (Iron-binding protein iscA OS=Haemophilus influenzae GN=iscA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.626e-14
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  194 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPN 475
            I LTE A + +      R + + LR+GVK  GCSG++Y +EF +  N+  +D V E  G  I+ DPKSL++L G++LDY    +  GF + NPN
Sbjct:    3 ITLTEKAAQRVKAFLDNRGKGIGLRLGVKTSGCSGLAYVLEFVDVLNS--EDQVFEQYGVNIIVDPKSLVYLNGIELDYVKEGLNEGFKYNNPN 94          
The following BLAST results are available for this feature:
BLAST of CX300062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ISCAP_ARATH1.458e-4789.11Iron-sulfur assembly protein IscA, chloroplastic O... [more]
Y1417_SYNY35.211e-2960.00Uncharacterized protein slr1417 OS=Synechocystis s... [more]
YCF83_PORPU4.878e-2755.45Uncharacterized protein ycf83 OS=Porphyra purpurea... [more]
YCF83_GALSU7.787e-2555.21Uncharacterized protein ycf83 OS=Galdieria sulphur... [more]
YCF83_PORYE5.048e-2452.63Uncharacterized protein ycf83 OS=Porphyra yezoensi... [more]
ERPA_METFK1.127e-1540.78Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_XYLFM7.306e-1546.67Iron--sulfur cluster insertion protein erpA OS=Xyl... [more]
ERPA1_METCA9.541e-1542.42Iron-sulfur cluster insertion protein erpA 1 OS=Me... [more]
YUTM_BACSU1.246e-1441.67Uncharacterized protein yutM OS=Bacillus subtilis ... [more]
ISCA_HAEIN3.626e-1441.49Iron-binding protein iscA OS=Haemophilus influenza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07005F07SK SaltLeaf1 Citrus clementina cDNA clone C07005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300062 ID=CX300062; Name=CX300062; organism=Citrus clementina; type=EST; length=479bp
GTTCTCTGCAGTTACTGCTCGTTGCCCCTCTCTCCTTCGCCTTCCCAACG
GTCATACACCGTCGATCTCCGTTAATCAGAACTCAGTCTCCTTTCGTTTC
TCGAAATTAAATCTCAGCCGTCGATATTCAGTTTCAGTCCGATCATCCTC
TACATCAGCGGTTGCGCCGGCGACGGAGGAGCTGAAGCCGGCGATTTTAC
TGACAGAGAATGCACTAAAGCATCTAAATAAGATGAGGTCTGAGCGTAGT
GAGGATTTGTGCTTAAGAATTGGAGTGAAACAGGGCGGATGCTCCGGCAT
GTCTTACACGATGGAGTTTGAGAACAGAGCAAATGCGAGACCAGATGATT
CGGTTATCGAATATGATGGTTTTGTGATAGTTTGTGATCCAAAGAGTCTC
CTCTTTTTGTTTGGGATGCAATTGGATTACAGTGATGCCCTTATTGGTGG
AGGCTTTTCTTTCAAGAACCCAAATGCTA
back to top