CX300064
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22 Identity = 57/92 (61.96%), Postives = 60/92 (65.22%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 277 VF RLKTK+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE VLNGSSG PESL + L + Sbjct: 831 VFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.630e-21 Identity = 56/93 (60.22%), Postives = 60/93 (64.52%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 277 VF+RLK K+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE TVLNGSSG P A +P+PV Sbjct: 831 VFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19 Identity = 55/93 (59.14%), Postives = 59/93 (63.44%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 280 VF RLK K+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE TVLNG+SGAP A P P++ Sbjct: 834 VFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19 Identity = 54/96 (56.25%), Postives = 58/96 (60.42%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 277 +F+RLK K++ELQ GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE TVLNG SG P E D LPV Sbjct: 778 LFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11 Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 235 VF R+K +DI+L GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK TVL G Sbjct: 737 VFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 175 VF R+K +DI+L GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK Sbjct: 737 VFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11 Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 178 +F+R+K + I LQ GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE Sbjct: 767 IFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825 The following BLAST results are available for this feature:
BLAST of CX300064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300064 ID=CX300064; Name=CX300064; organism=Citrus clementina; type=EST; length=370bpback to top |