CX300064

Overview
NameCX300064
Unique NameCX300064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14937 contig Ccv1_Contig14937:48..417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22
Identity = 57/92 (61.96%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 277
            VF RLKTK+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE               VLNGSSG PESL + L +
Sbjct:  831 VFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.630e-21
Identity = 56/93 (60.22%), Postives = 60/93 (64.52%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 277
            VF+RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNGSSG P   A +P+PV
Sbjct:  831 VFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 55/93 (59.14%), Postives = 59/93 (63.44%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 280
            VF RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNG+SGAP   A P P++
Sbjct:  834 VFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 54/96 (56.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 277
            +F+RLK K++ELQ            GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE              TVLNG SG P    E   D LPV
Sbjct:  778 LFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 235
            VF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK               TVL G
Sbjct:  737 VFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 175
            VF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  737 VFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of CX300064 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2
Query:    2 VFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 178
            +F+R+K + I LQ            GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  767 IFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
The following BLAST results are available for this feature:
BLAST of CX300064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CLPC_PEA3.206e-2261.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC4.630e-2160.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC1.140e-1959.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.489e-1956.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE1.950e-1147.44ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU2.546e-1156.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA4.343e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
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Properties
Property NameValue
Genbank descriptionC07005F09SK SaltLeaf1 Citrus clementina cDNA clone C07005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300064 ID=CX300064; Name=CX300064; organism=Citrus clementina; type=EST; length=370bp
GGTGTTTGATAGACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGA
GATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCA
AGGCCATTGAGAAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGA
GAAGATGCTTGCAAGAGAGATCAAAGAGGGTGATTCGGTCATTGTTGATG
TCGATTCTGATGGGAACGTGACTGTGCTCAACGGCAGCAGCGGTGCTCCA
GAATCATTGGCAGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTG
AGATGTTGTTTGTACTTCCATTTTGATTTCAACTGGCTAGATACTCAGTC
TGTTTTCTTGGAAGGACTAC
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