CX300068

Overview
NameCX300068
Unique NameCX300068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300068_ssr69 microsatellite CX300068_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5835 contig Ccv1_Contig5835:156..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.060e-47
Identity = 98/168 (58.33%), Postives = 125/168 (74.40%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            RV++ADI+D+LG S+  ++G      +  SYVHCDVT E ++  AV+ AV+++GKLD+MFNNAG+       + +  + +FE VL+VNLVG FLGTKHAARVM PA RGSIISTAS+   + G ASHAYT+SKH +VG  +NAA ELGR GIRVNCVSP  VATPLA+
Sbjct:   43 RVVVADIQDELGASLVAELGP-----DASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSSVSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLAR 205          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.887e-39
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLA 506
            +V I D++DDLG  VCK +           ++H DV  E +I NAV+ AV  +G LDI+ NNAG+      +I +   +EFE+   VN+ G FL  KHAARVM P  +GSI+S  SV GV+GGV  H+Y  SKH V+GL ++ A ELG+ GIRVNCVSPY VAT LA
Sbjct:   46 KVCIVDLQDDLGGEVCKSL-LRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLA 211          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.418e-38
Identity = 86/170 (50.59%), Postives = 113/170 (66.47%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYG-KLDIMFNNAGIVDE---AKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            RV+IADI D  GE++   +G         S+V CDV+ E ++  AV+ A+S++G +LD+  NNAG++     A  +IL  D AEF+ VL VN +G  LG KHAAR M P   GSI+S ASV  V+GG+  HAYT+SKH +VGL KNAA EL   G+RVNCVSP+ VATP+
Sbjct:   81 RVVIADIDDAAGEALASALGPQV------SFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPM 244          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.900e-29
Identity = 72/166 (43.37%), Postives = 105/166 (63.25%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            +V+  DI D+ G++V  ++      A+   YVH DVT+  +   AV+TAV+ +G L ++ NNAGI++     I D    E++ +L VNL GVFLG +   + MK AGRGSII+ +S+ G+ G VA H YT++K  V GL K+ A+ELG  GIRVN + P +V TP+
Sbjct:   33 KVVFGDILDEEGKAVAAEL------ADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIG--TIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM 190          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.900e-29
Identity = 72/166 (43.37%), Postives = 105/166 (63.25%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            +V+  DI D+ G++V  ++      A+   YVH DVT+  +   AV+TAV+ +G L ++ NNAGI++     I D    E++ +L VNL GVFLG +   + MK AGRGSII+ +S+ G+ G VA H YT++K  V GL K+ A+ELG  GIRVN + P +V TP+
Sbjct:   33 KVVFGDILDEEGKAVAAEL------ADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIG--TIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM 190          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.686e-26
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  108 DVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDN-DQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAKDFYK 521
            DV+ E ++E  V     ++G++D  FNNAGI  E K N  ++   AEF+ V+S+NL GVFLG +   ++M+  G G +++TASV G+ G      Y ++KHGVVGL +N+AVE GR+GIR+N ++P  + TP+ ++  K
Sbjct:   72 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI--EGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMK 208          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.732e-26
Identity = 65/165 (39.39%), Postives = 102/165 (61.82%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V++ADI +  GE++ +         +   +VH D+T E   +NA+ +AV ++G LD++ NNAGI  E    I + + + +  VL+VNL G+FL +KHA + M  +G+G+II+T SV GV+      AY +SK GV+ L ++ AV+  +  IRVNCV P ++ TPL
Sbjct:   32 VVVADIDEAQGEAMIRKENN-----DRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGI--EIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPL 189          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 65/165 (39.39%), Postives = 100/165 (60.61%), Query Frame = 3
Query:    9 VLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPL 503
            V++ADI +  GE++ +         +   +V  D+T E   ++AV +AV  +G LD++ NNAGI  E    I + + +++  VL VNL G+FL +KHA + M  AG+G+II+T SV G++      AY +SK GV+ L K+ AV+  +  IRVNCV P ++ TPL
Sbjct:   32 VVVADIDEAQGEAMVRKENN-----DRLHFVQTDITDEAACQHAVESAVHTFGGLDVLINNAGI--EIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPL 189          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.173e-24
Identity = 59/168 (35.12%), Postives = 100/168 (59.52%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            RV++ D+  +  E   K +G           V CDVT+  +++  + TAV ++G LD+M NNAGI  +A    +  +Q  F+ V++V+L G + GT+ AA +M+   RG+I++ +SV G +G V    Y+++K G+VG+ K AA EL   GIRVN ++P ++ + + +
Sbjct:   33 RVVLGDVNLEATEVAAKRLGGDDVALA----VRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTE 194          
BLAST of CX300068 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.173e-24
Identity = 59/168 (35.12%), Postives = 100/168 (59.52%), Query Frame = 3
Query:    6 RVLIADIKDDLGESVCKDIGXXXXXANGCSYVHCDVTKEKEIENAVNTAVSQYGKLDIMFNNAGIVDEAKHNILDNDQAEFELVLSVNLVGVFLGTKHAARVMKPAGRGSIISTASVCGVIGGVASHAYTSSKHGVVGLMKNAAVELGRFGIRVNCVSPYVVATPLAK 509
            RV++ D+  +  E   K +G           V CDVT+  +++  + TAV ++G LD+M NNAGI  +A    +  +Q  F+ V++V+L G + GT+ AA +M+   RG+I++ +SV G +G V    Y+++K G+VG+ K AA EL   GIRVN ++P ++ + + +
Sbjct:   33 RVVLGDVNLEATEVAAKRLGGDDVALA----VRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTE 194          
The following BLAST results are available for this feature:
BLAST of CX300068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MOMAS_ORYSJ1.060e-4758.33Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH6.887e-3949.70Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
TS2_MAIZE3.418e-3850.59Sex determination protein tasselseed-2 OS=Zea mays... [more]
HSD_MYCTU2.900e-2943.373-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO2.900e-2943.373-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
LVR_LEIAQ6.686e-2642.45Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
BACC2_BACSU8.732e-2639.39Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACSU4.792e-2439.39Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y1385_MYCBO8.173e-2435.12Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU8.173e-2435.12Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]

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Properties
Property NameValue
Genbank descriptionC07005G01SK SaltLeaf1 Citrus clementina cDNA clone C07005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300068 ID=CX300068; Name=CX300068; organism=Citrus clementina; type=EST; length=524bp
GCACGAGGGTACTCATTGCAGATATTAAAGATGACTTAGGCGAGTCTGTA
TGCAAGGACATAGGCTCTTCATCATCATCAGCCAACGGCTGCTCCTATGT
CCATTGTGATGTAACCAAAGAGAAAGAAATCGAAAACGCCGTTAACACGG
CCGTCTCCCAGTACGGAAAGCTAGACATTATGTTCAATAACGCCGGCATT
GTGGATGAAGCCAAACATAACATTCTGGATAATGATCAGGCTGAATTTGA
GCTCGTACTTTCCGTTAACCTCGTGGGCGTATTTTTGGGGACGAAACATG
CTGCGAGGGTGATGAAACCCGCCGGACGCGGCAGCATAATTTCAACTGCA
AGCGTTTGCGGAGTCATTGGTGGCGTTGCATCGCATGCATACACAAGTTC
GAAGCACGGCGTTGTGGGGCTGATGAAGAATGCTGCCGTGGAGCTTGGAC
GATTTGGCATTAGGGTGAATTGTGTGTCACCTTATGTGGTCGCAACTCCA
TTGGCAAAGGATTTTTACAAGCTT
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