CX300079

Overview
NameCX300079
Unique NameCX300079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15505 contig Ccv1_Contig15505:25..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_SOYBN (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.912e-55
Identity = 106/148 (71.62%), Postives = 119/148 (80.41%), Query Frame = 1
Query:   88 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKESTANL 531
            MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRK S+QYAR+S T+FCVDK VTS VIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKE HCMLFLTP+NDFAG +Q+I LDEIKESTAN+
Sbjct:    1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM 144          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC2_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.223e-53
Identity = 98/122 (80.33%), Postives = 110/122 (90.16%), Query Frame = 1
Query:  166 RPVTQIRAQVEPSEKSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKESTANL 531
            RP   I ++VEPS+KSVEIMRK S+QYAR+S T+FCVDK VTS VIKGLA+HKDSLGAPLCPCR+YDDKAAEA QGFWNCPCVPMRERKE HCMLFLTPENDFAG+DQ+I LDEI+E TAN+
Sbjct:   27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPLCPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTIGLDEIREVTANM 148          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC1_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.767e-52
Identity = 93/126 (73.81%), Postives = 113/126 (89.68%), Query Frame = 1
Query:  157 ARPRPVTQ-IRAQVEPSEKSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKESTANL 531
            A PR  ++ IRAQ +PS+KS+E+MRK S+Q+ R+SDT+FCVDKSVT+ VIKGLADH+D+LGAPLCPCRHYDDK AEA QGFWNCPCVPMRERKE HCMLFLTP+NDFAG++Q+I LDEI+E T+N+
Sbjct:   19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTLGAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTITLDEIREVTSNM 144          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_MAIZE (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.548e-48
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 1
Query:  160 RPRPVTQIRAQVE----PSEKSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKESTA 525
            RPR    +RAQ       ++KSVE+MRK S+QYARRS+TFFC DK+VT+ VIKGLADH+D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKE HCMLFLTP+NDFAG+DQ I  +EIKE+T+
Sbjct:   26 RPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHRDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVISFEEIKEATS 150          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_PORYE (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.169e-34
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  208 KSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSI 495
            +++E MRK S+ YA+R+ TFFC+D SVT+ VI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRER+E HCMLFLTP+N+FA   Q I
Sbjct:   11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEI 106          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_PORPU (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.833e-34
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  211 SVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKESTAN 528
            ++E MRK S+ YA+R+ TFFC D SVT+ VI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRERKE HCMLFLTP+N+F    Q I    + E  A+
Sbjct:   12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLEKIAS 117          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_GUITH (Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.979e-33
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  193 VEPSEKSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSI 495
            +E    S   M+K ++ YA+R++TFFC D S+T  V++GLA HKD  GAPLCPCRHYDDK+ E    +WNCPCVPMRERKE HCMLFLT +N+FAG  Q++
Sbjct:    2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDKSEEVASTYWNCPCVPMRERKECHCMLFLTKDNEFAGSSQTL 102          
BLAST of CX300079 vs. ExPASy Swiss-Prot
Match: FTRC_CYACA (Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.115e-33
Identity = 58/103 (56.31%), Postives = 80/103 (77.67%), Query Frame = 1
Query:  208 KSVEIMRKLSQQYARRSDTFFCVDKSVTSGVIKGLADHKDSLGAPLCPCRHYDDKAAEAHQGFWNCPCVPMRERKERHCMLFLTPENDFAGQDQSICLDEIKE 516
            K++E + K ++ YA+ S T+FC+D+S+T+ VI+GLA HKD  GAPLCPCRHY++K  E    +WNCPCVPMRERKE HCMLFL P N+F+G+ Q I  D++++
Sbjct:    6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVLAAYWNCPCVPMRERKECHCMLFLQPSNEFSGESQLISKDDLQK 108          
The following BLAST results are available for this feature:
BLAST of CX300079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FTRC_SOYBN2.912e-5571.62Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC2_SPIOL1.223e-5380.33Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC1_SPIOL1.767e-5273.81Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_MAIZE1.548e-4872.22Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_PORYE2.169e-3465.63Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_PORPU4.833e-3461.32Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_GUITH6.979e-3359.41Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_CYACA9.115e-3356.31Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
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Properties
Property NameValue
Genbank descriptionC07005G12SK SaltLeaf1 Citrus clementina cDNA clone C07005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300079 ID=CX300079; Name=CX300079; organism=Citrus clementina; type=EST; length=578bp
CACGAGGCACCAATCGTTTATGTAGCAAGACGCCCTATACAAACATCTTC
TTCTTGTTAGAGCCTATAGTCAATCATCCATTCCAACATGACTCTTCAAT
CCTCTTTGTGCGGCTCCGGCGTTTCGACTTTCATCTGCACACCCCGTCCC
ATAATTGCCCGTCCTCGCCCGGTGACTCAAATTCGTGCCCAAGTGGAGCC
ATCCGAGAAGTCAGTTGAGATAATGAGGAAACTCTCACAGCAATATGCTA
GAAGATCTGACACTTTCTTTTGTGTTGACAAAAGTGTCACTTCTGGTGTT
ATTAAGGGATTGGCAGATCATAAAGATTCATTGGGTGCACCTCTTTGTCC
ATGTAGGCATTATGACGACAAAGCTGCTGAAGCTCACCAGGGCTTCTGGA
ATTGTCCATGTGTTCCCATGAGAGAGAGGAAGGAACGCCACTGCATGCTC
TTTCTCACTCCAGAGAACGATTTTGCTGGCCAGGATCAGTCCATCTGCTT
GGATGAAATCAAGGAATCAACAGCAAATCTGTGATGTAACTGACTATAAT
AGGCAAGTTTTACTTGTTTAATCAGTGA
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