CX300083

Overview
NameCX300083
Unique NameCX300083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3572 contig Ccv1_Contig3572:81..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.184e-33
Identity = 63/69 (91.30%), Postives = 69/69 (100.00%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 209
            +HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:   15 SHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.184e-33
Identity = 63/69 (91.30%), Postives = 69/69 (100.00%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 209
            +HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:   15 SHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.874e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 209
            +HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:   15 SHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 209
            THTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQ
Sbjct:   15 THTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.713e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            +HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:   15 SHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.922e-24
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            THTLC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTGTGRMR+L+ V RRF++GF+EG
Sbjct:   15 THTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 203
            +HTLC RCGRRSFH+QK  C++C YPAA+ R++NW++KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:   13 SHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTG 79          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            +HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:   15 SHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CX300083 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 206
            THTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   15 THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of CX300083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL373_ARATH1.184e-3391.3060S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL372_ARATH1.184e-3391.3060S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_ARATH5.874e-3391.3060S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL371_DROME1.550e-2573.91Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37A_YEAST1.713e-2469.1260S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_SPOFR2.922e-2471.6460S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37_CANAL1.110e-2367.1660S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37B_YEAST1.110e-2366.1860S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_RAT1.894e-2370.5960S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE1.894e-2370.5960S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]

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Properties
Property NameValue
Genbank descriptionC07005H04SK SaltLeaf1 Citrus clementina cDNA clone C07005H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300083 ID=CX300083; Name=CX300083; organism=Citrus clementina; type=EST; length=435bp
AGACGCACACTTTGTGTGTGCGATGTGGCCGTCGCAGCTTCCATCTTCAG
AAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTCGCAAGAGAACGTA
TAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACTGGAACCGGCAGGA
TGAGGTATCTGCGCCATGTCCCTCGCAGGTTCAAGAGCGGCTTCAGAGAA
GGTACTCAGGCAGCACCAAGGAAGAAGGGAGCAGCTGCCTCTGCTTAAGG
AGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCATTATAGATTTAGT
CTTCTTTAATGTGTGGAGACAAGATTCATGGGAACATAATTTTGAAAAAG
GATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTATGATTACTATGTA
GTCTTTTTCAATTTTGGACAAGATGAATGAGTTTA
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