CX300089

Overview
NameCX300089
Unique NameCX300089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length343
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12183 contig Ccv1_Contig12183:19..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.292e-47
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.878e-47
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.878e-47
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.094e-46
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.428e-46
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFN KKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.209e-45
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.694e-45
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFE  ADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.694e-45
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.694e-45
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTD 90          
BLAST of CX300089 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.595e-45
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1
Query:   73 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTD 342
            MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTD
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTD 90          
The following BLAST results are available for this feature:
BLAST of CX300089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A2_SOLLC1.292e-4797.78Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A_MANES2.878e-4796.67Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A3_SOLTU2.878e-4796.67Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_SOLTU1.094e-4695.56Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A4_SOLLC1.428e-4695.56Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLLC1.209e-4594.44Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_MEDSA2.694e-4593.33Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_TOBAC2.694e-4593.33Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL2.694e-4593.33Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLTU4.595e-4593.33Eukaryotic translation initiation factor 5A-4 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC07005H10SK SaltLeaf1 Citrus clementina cDNA clone C07005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300089 ID=CX300089; Name=CX300089; organism=Citrus clementina; type=EST; length=343bp
TGAAGGTATAGTTCGATTCTAACAAAATTTGGTTGTCGAAGCTCTAATTG
TGAATCGCAGGAACCAGACGATATGTCGGACGAAGAGCACCACTTTGAGT
CGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAGGCCGGAACG
ATTCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTGCAAGGTTGT
TGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTAAGTGTCACT
TTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCC
TCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGACT
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