CX300090

Overview
NameCX300090
Unique NameCX300090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300090 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 2 
Query:   80 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAKACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASKSIEREYLEYNDTHTVFKGEACDDLGGTFCE 403
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP +AC++IGG+AC+ +MYPEAKL   A    S  A++ ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of CX300090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ2.758e-2145.61Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionC07005H11SK SaltLeaf1 Citrus clementina cDNA clone C07005H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300090 ID=CX300090; Name=CX300090; organism=Citrus clementina; type=EST; length=409bp
ATTTAAAATGCACGCTGCTTTGAGCATTTCACCAACAACGCTTGTCCCTT
TAACAACCTCCAAGAACTTTTCCCAAGTGGCCATTTATACTCCAAAGCTA
GTAGGCAGCTCACTTGCTTCCAGACGCAGCGCAATCAAAGTAGCTGCTAC
AACAAGCAATGACCCGTCCACATTTGATTACAATTCTGCCTTCTCGGTGT
TTCCAGCAAAGGCATGTGAGGTAATCGGTGGAGATGCGTGCTCGGCAGAG
ATGTATCCTGAGGCGAAGTTGAAACCAGAGGCCAAGAACGACACATCAAC
AACTGCCTCAAAATCCATTGAGAGAGAGTATTTAGAGTACAACGATACAC
ACACGGTTTTCAAAGGAGAGGCTTGTGATGATCTTGGAGGAACGTTCTGT
GAACGCGAG
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