CX300096

Overview
NameCX300096
Unique NameCX300096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14939 contig Ccv1_Contig14939:165..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: FHIT_DICDI (Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium discoideum GN=fhit PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.639e-39
Identity = 78/149 (52.35%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   31 FGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            FGP+ I   E+F++T LS+A+VNL+P+LPGHVLVC +R   R  DLT +E TDLWL+AQ++   +E +  G   TFAIQDG  AGQTV HVHIH++PRK  DFE ND+IY+ IE             KER+ RS EEM +E+ + R LF
Sbjct:    6 FGPWLIRQSEIFFTTELSFALVNLKPVLPGHVLVCPKRIVPRVKDLTKEEFTDLWLSAQRISSVVEEHFNGDGITFAIQDGKNAGQTVEHVHIHIIPRKKFDFENNDQIYNEIE-------------KEREPRSYEEMEKESSELRPLF 141          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: FHIT_BOVIN (Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=FHIT PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.278e-37
Identity = 77/151 (50.99%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   25 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF D++ +E  DL+  AQ+VG  +E + +G+S TF++QDGPEAGQTV HVH+H+LPRKAGDF +ND IYDA+E  ++E     D D     RS EEM  EA   R  F
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKAGDFHRNDSIYDALEKHDRE-----DKDSPALWRSEEEMAAEAAALRVYF 148          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: FHIT_HUMAN (Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN=FHIT PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.698e-35
Identity = 77/151 (50.99%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   25 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF DL  DE  DL+ T Q+VG  +E +  G+S TF++QDGPEAGQTV HVH+HVLPRKAGDF +ND IY+ ++  +KE       D     RS EEM  EA   R  F
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKE-------DFPASWRSEEEMAAEAAALRVYF 146          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: FHIT_RAT (Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegicus GN=Fhit PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.217e-35
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 1
Query:   25 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            F FG + I    VF  T LS+A+VN +P++PGHVL+C  R  +RF DL  DE  DL+   Q+VG  +E + +G+S TF++QDGPEAGQTV HVH+H+LPRK+GDF +ND IYD ++  ++E     + D     RS EEM  EA+  R+ F
Sbjct:    3 FKFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLMCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKSGDFRRNDNIYDELQKHDRE-----EEDSPAFWRSEEEMAAEAEVLRAYF 148          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: FHIT_MOUSE (Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN=Fhit PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   25 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF DL  DE  DL+   Q+VG  +E + +G+S TF++QDGPEAGQTV HVH+HVLPRKAGDF +ND IYD ++  ++E     + D     RS +EM  EA+  R  F
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDLHPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHVLPRKAGDFPRNDNIYDELQKHDRE-----EEDSPAFWRSEKEMAAEAEALRVYF 148          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: NFT1_CAEEL (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.461e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 1
Query:   10 SSTTQFTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSL 474
            S T    F  + I A  +FYSTP S+  VNL+P+  GHVLV  +R   R  DLT  ET DL++ A+KV   LE +H  +STT  +QDG +AGQTVPHVHIH+LPR+AGDF  N EIY  +   +KE         ERK RS E+M +EA  YR+L
Sbjct:  294 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKLASHDKE--------PERKPRSNEQMAEEAVVYRNL 439          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: APH1_SCHPO (Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Schizosaccharomyces pombe GN=aph1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.148e-30
Identity = 70/173 (40.46%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   22 QFTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKEL---------------------QQKLDLDKERKDRSLEEMNQEADQYRSLF 477
            Q  F  + + + +VFY T LS A VNL+P+LPGHVLV  +R   R  DLT  E TDL+ + +KV + +E     S++   IQDG +AGQTVPHVH+H++PRK  DF +ND +Y  +E  E  L                     +Q +  D++RK R+LEEM +EA   +  F
Sbjct:    4 QLYFSKFPVGS-QVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGNERYAGDERPPTSMRQAIPKDEDRKPRTLEEMEKEAQWLKGYF 175          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: NFT1_DROME (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 1
Query:   46 IDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYR 468
            +D + +FY +   +A  NLR ++ GHVLV ++R   R   L   E  D++ T   V + LE  ++ +S T  +QDG +AGQTVPHVH H++PR+ GDF  ND+IY  ++ +           +E+  R++EE  +EA  YR
Sbjct:  323 VDKRTIFYESEHCFAFTNLRCVVKGHVLVSTKRVTPRLCGLDCAEMADMFTTVCLVQRLLEKIYQTTSATVTVQDGAQAGQTVPHVHFHIMPRRLGDFGHNDQIYVKLDERA----------EEKPPRTIEERIEEAQIYR 453          
BLAST of CX300096 vs. ExPASy Swiss-Prot
Match: HNT2_YEAST (Hit family protein 2 OS=Saccharomyces cerevisiae GN=HNT2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   55 KEVFYSTPLSYAMVNLRPLLPGHVLVCS-RREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIE 372
            ++VFY +  +YA+VNL+P++PGHVL+   R      +DLT  E+ D + T Q + + ++  +K  S   AIQDGPEAGQ+VPH+H H++PR   +    D IYD ++
Sbjct:   14 EQVFYKSKYTYALVNLKPIVPGHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSVPHLHTHIIPRYKIN-NVGDLIYDKLD 119          
The following BLAST results are available for this feature:
BLAST of CX300096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FHIT_DICDI5.639e-3952.35Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium d... [more]
FHIT_BOVIN5.278e-3750.99Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=F... [more]
FHIT_HUMAN1.698e-3550.99Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN... [more]
FHIT_RAT2.217e-3548.34Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegic... [more]
FHIT_MOUSE2.896e-3549.67Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN... [more]
NFT1_CAEEL5.461e-3449.68Nitrilase and fragile histidine triad fusion prote... [more]
APH1_SCHPO2.148e-3040.46Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] ... [more]
NFT1_DROME7.398e-2337.59Nitrilase and fragile histidine triad fusion prote... [more]
HNT2_YEAST3.217e-1842.06Hit family protein 2 OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionC07006A06SK SaltLeaf1 Citrus clementina cDNA clone C07006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300096 ID=CX300096; Name=CX300096; organism=Citrus clementina; type=EST; length=484bp
GCTCAGATGTCGTCGACGACTCAGTTTACGTTCGGGCCTTACAAAATTGA
TGCGAAGGAAGTGTTCTATAGCACTCCTCTCTCCTACGCCATGGTCAACC
TGCGCCCGTTGCTTCCTGGTCATGTACTTGTCTGCTCGAGGCGTGAAGCA
AAGCGCTTTGCTGATCTTACAGCTGATGAGACTACTGATTTATGGCTCAC
AGCCCAAAAGGTTGGCAAACAGCTCGAAAGCTACCACAAGGGTTCATCAA
CAACATTTGCCATCCAAGATGGGCCTGAAGCTGGACAGACAGTACCCCAT
GTTCACATCCATGTTCTCCCGCGCAAAGCTGGTGACTTTGAAAAAAATGA
TGAGATTTATGATGCAATAGAGGTGAAGGAGAAGGAATTACAGCAGAAGC
TTGATTTGGATAAGGAAAGGAAGGACAGAAGCCTCGAGGAGATGAATCAA
GAGGCTGATCAATACAGGTCGCTTTTCCTGTGAA
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